Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Slc25a42-202ENSMUST00000110127 3196 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Lig3P97386 Hdac6-201ENSMUST00000033501 4142 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Lig3P97386 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Lig3P97386 Pde6b-201ENSMUST00000031456 2799 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lig3P97386 Srfbp1-201ENSMUST00000025406 1463 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lig3P97386 Pparg-204ENSMUST00000203732 1826 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Lig3P97386 AC156031.2-201ENSMUST00000213107 3310 ntBASIC12.9□□□□□ -0.35
Lig3P97386 Trub2-201ENSMUST00000048044 3408 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
Lig3P97386 Hyal1-202ENSMUST00000112387 2706 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.35
Lig3P97386 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC12.89□□□□□ -0.35
Lig3P97386 Fam163a-201ENSMUST00000015628 3882 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lig3P97386 Hvcn1-202ENSMUST00000100747 2805 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lig3P97386 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lig3P97386 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lig3P97386 Steap3-201ENSMUST00000112639 2931 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lig3P97386 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lig3P97386 Dbh-201ENSMUST00000000910 2552 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lig3P97386 Smtn-210ENSMUST00000170588 3386 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lig3P97386 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lig3P97386 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lig3P97386 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lig3P97386 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lig3P97386 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lig3P97386 Tmbim1-202ENSMUST00000113796 11011 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lig3P97386 Tulp2-202ENSMUST00000085331 1525 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Lig3P97386 Gm45897-201ENSMUST00000212679 1998 ntTSL 5 BASIC12.89□□□□□ -0.35
Lig3P97386 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Lig3P97386 Gm12501-201ENSMUST00000119163 529 ntBASIC12.89□□□□□ -0.35
Lig3P97386 Gm12291-201ENSMUST00000121627 311 ntBASIC12.89□□□□□ -0.35
Lig3P97386 Gm13257-201ENSMUST00000132840 665 ntTSL 3 BASIC12.89□□□□□ -0.35
Lig3P97386 Gm12130-201ENSMUST00000133599 639 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Lig3P97386 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Lig3P97386 Gm15881-201ENSMUST00000148792 942 ntBASIC12.89□□□□□ -0.35
Lig3P97386 Gm7535-201ENSMUST00000164167 909 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
Lig3P97386 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lig3P97386 Gm28913-201ENSMUST00000186240 364 ntTSL 3 BASIC12.89□□□□□ -0.35
Lig3P97386 CT485607.1-201ENSMUST00000216100 85 ntBASIC12.89□□□□□ -0.35
Lig3P97386 Gm29676-202ENSMUST00000222409 364 ntTSL 2 BASIC12.89□□□□□ -0.35
Lig3P97386 Tff1-201ENSMUST00000024831 478 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lig3P97386 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lig3P97386 Azgp1-201ENSMUST00000035390 1297 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lig3P97386 Rassf4-201ENSMUST00000035842 6460 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lig3P97386 Hoxc5-201ENSMUST00000001709 2923 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lig3P97386 Irx3os-203ENSMUST00000133528 1354 ntTSL 5 BASIC12.89□□□□□ -0.35
Lig3P97386 Gsdmcl-ps-203ENSMUST00000188367 1375 ntBASIC12.89□□□□□ -0.35
Lig3P97386 Gm37437-201ENSMUST00000194451 1937 ntBASIC12.89□□□□□ -0.35
Lig3P97386 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Lig3P97386 Dnajc5-203ENSMUST00000108797 3664 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lig3P97386 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC12.89□□□□□ -0.35
Lig3P97386 Hap1-202ENSMUST00000138603 3316 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Lig3P97386 Sec16a-202ENSMUST00000114082 8797 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Lig3P97386 Cry2-201ENSMUST00000090559 3976 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lig3P97386 Lhx9-205ENSMUST00000112030 4633 ntTSL 5 BASIC12.89□□□□□ -0.35
Lig3P97386 Vmn2r-ps25-201ENSMUST00000202322 2321 ntBASIC12.89□□□□□ -0.35
Lig3P97386 Tns1-209ENSMUST00000187691 2813 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Lig3P97386 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Lig3P97386 Gm14243-201ENSMUST00000131401 2172 ntTSL 2 BASIC12.88□□□□□ -0.35
Lig3P97386 Cdc7-204ENSMUST00000118261 3129 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Lig3P97386 Nrg1-202ENSMUST00000207417 3138 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Lig3P97386 Gm9008-201ENSMUST00000097218 2353 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Lig3P97386 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Lig3P97386 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Lig3P97386 Zfp654-202ENSMUST00000207826 6261 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Lig3P97386 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Lig3P97386 Gm32036-201ENSMUST00000221484 2638 ntTSL 2 BASIC12.88□□□□□ -0.35
Lig3P97386 Stra6-202ENSMUST00000085677 2725 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Lig3P97386 Krtap4-8-201ENSMUST00000107439 983 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Lig3P97386 Gm14921-201ENSMUST00000118643 908 ntBASIC12.88□□□□□ -0.35
Lig3P97386 B230206L02Rik-202ENSMUST00000132584 695 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Lig3P97386 2310057J18Rik-204ENSMUST00000152363 1043 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Lig3P97386 Gm9230-201ENSMUST00000188228 532 ntBASIC12.88□□□□□ -0.35
Lig3P97386 Gm10550-201ENSMUST00000188846 982 ntTSL 2 BASIC12.88□□□□□ -0.35
Lig3P97386 Gm45460-201ENSMUST00000211385 1038 ntTSL 5 BASIC12.88□□□□□ -0.35
Lig3P97386 CT009713.8-201ENSMUST00000225448 560 ntBASIC12.88□□□□□ -0.35
Lig3P97386 CT030637.1-201ENSMUST00000228016 669 ntBASIC12.88□□□□□ -0.35
Lig3P97386 Olfr272-201ENSMUST00000051600 962 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Lig3P97386 Gm26035-201ENSMUST00000083065 308 ntBASIC12.88□□□□□ -0.35
Lig3P97386 Gramd2-201ENSMUST00000098661 1368 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Lig3P97386 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Lig3P97386 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Lig3P97386 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Lig3P97386 Stat3-202ENSMUST00000103114 6042 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Lig3P97386 Nexmif-202ENSMUST00000087879 10891 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Lig3P97386 Slc12a9-201ENSMUST00000039991 3330 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Lig3P97386 Tcirg1-204ENSMUST00000126070 3041 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Lig3P97386 Mindy1-202ENSMUST00000107187 2827 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Lig3P97386 C5ar1-202ENSMUST00000168818 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Lig3P97386 Mmachc-201ENSMUST00000030453 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Lig3P97386 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Lig3P97386 Plin4-201ENSMUST00000002908 5755 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Lig3P97386 Aldh3a1-202ENSMUST00000108716 1721 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Lig3P97386 Pip4k2b-201ENSMUST00000018691 5053 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Lig3P97386 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Lig3P97386 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Lig3P97386 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Lig3P97386 AC124433.1-202ENSMUST00000224762 1535 ntBASIC12.88□□□□□ -0.35
Lig3P97386 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Lig3P97386 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Lig3P97386 Cnot7-211ENSMUST00000149992 2982 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Lig3P97386 Sez6l2-201ENSMUST00000106332 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 55.7 ms