Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lire1P11260 Ubtf-202ENSMUST00000079589 3286 ntAPPRIS P3 TSL 5 BASIC11.25□□□□□ -0.61
Lire1P11260 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC11.25□□□□□ -0.61
Lire1P11260 Accs-202ENSMUST00000068513 1872 ntAPPRIS P3 TSL 5 BASIC11.25□□□□□ -0.61
Lire1P11260 Tjp1-201ENSMUST00000032729 6102 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lire1P11260 Rbm12b2-201ENSMUST00000063839 3327 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lire1P11260 Ppp3cb-202ENSMUST00000159027 3831 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lire1P11260 Rab3gap2-204ENSMUST00000194740 4418 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
Lire1P11260 Fbp1-201ENSMUST00000092888 1479 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lire1P11260 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
Lire1P11260 Usp2-203ENSMUST00000114830 2122 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Lire1P11260 Phf8-211ENSMUST00000168501 6359 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Lire1P11260 Arhgef9-206ENSMUST00000113884 3784 ntTSL 5 BASIC11.24□□□□□ -0.61
Lire1P11260 Tor4a-201ENSMUST00000081869 3255 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Lire1P11260 AC156031.2-201ENSMUST00000213107 3310 ntBASIC11.24□□□□□ -0.61
Lire1P11260 Pif1-203ENSMUST00000134538 3395 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Lire1P11260 Chic1-201ENSMUST00000116547 7375 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Lire1P11260 Lef1-201ENSMUST00000029611 3482 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Lire1P11260 AC154314.2-201ENSMUST00000223677 3502 ntBASIC11.24□□□□□ -0.61
Lire1P11260 Gm36814-201ENSMUST00000197457 1755 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Lire1P11260 Wapl-202ENSMUST00000090027 4185 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Lire1P11260 Dis3l-201ENSMUST00000068367 3605 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Lire1P11260 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Lire1P11260 9330111N05Rik-203ENSMUST00000181508 1848 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Lire1P11260 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Lire1P11260 Cklf-202ENSMUST00000098464 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Lire1P11260 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC11.24□□□□□ -0.61
Lire1P11260 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Lire1P11260 Gm11439-201ENSMUST00000118598 409 ntBASIC11.24□□□□□ -0.61
Lire1P11260 Gm12012-201ENSMUST00000118857 1066 ntBASIC11.24□□□□□ -0.61
Lire1P11260 Endov-204ENSMUST00000129327 1184 ntTSL 5 BASIC11.24□□□□□ -0.61
Lire1P11260 Gm11961-202ENSMUST00000141157 760 ntTSL 3 BASIC11.24□□□□□ -0.61
Lire1P11260 C230066G23Rik-201ENSMUST00000150195 650 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Lire1P11260 Ccdc188-201ENSMUST00000167061 747 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Lire1P11260 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC11.24□□□□□ -0.61
Lire1P11260 Gm33175-201ENSMUST00000211562 461 ntTSL 5 BASIC11.24□□□□□ -0.61
Lire1P11260 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC11.24□□□□□ -0.61
Lire1P11260 AC166051.1-201ENSMUST00000214313 210 ntBASIC11.24□□□□□ -0.61
Lire1P11260 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Lire1P11260 Mirlet7c-2-201ENSMUST00000083674 95 ntBASIC11.24□□□□□ -0.61
Lire1P11260 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Lire1P11260 Fsd2-201ENSMUST00000042318 3985 ntAPPRIS P1 TSL 2 BASIC11.24□□□□□ -0.61
Lire1P11260 Zfp954-201ENSMUST00000056246 2042 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Lire1P11260 Cald1-205ENSMUST00000115027 4777 ntTSL 5 BASIC11.24□□□□□ -0.61
Lire1P11260 Mamld1-201ENSMUST00000082088 4796 ntAPPRIS P4 TSL 5 BASIC11.24□□□□□ -0.61
Lire1P11260 Entpd4-206ENSMUST00000184973 3589 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Lire1P11260 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Lire1P11260 Cep250-202ENSMUST00000094421 7919 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Lire1P11260 Dnajc5-203ENSMUST00000108797 3664 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Lire1P11260 4930451G09Rik-201ENSMUST00000090457 2206 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Lire1P11260 Csgalnact1-203ENSMUST00000130214 3029 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Lire1P11260 Slitrk3-202ENSMUST00000192477 4592 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Lire1P11260 Gatad2a-201ENSMUST00000065169 3812 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Lire1P11260 Piezo2-202ENSMUST00000047480 10724 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Lire1P11260 Pcdhga6-201ENSMUST00000195823 4733 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Lire1P11260 Rasgrp4-208ENSMUST00000161522 3242 ntTSL 5 BASIC11.24□□□□□ -0.61
Lire1P11260 Bbs7-202ENSMUST00000108155 2437 ntTSL 5 BASIC11.24□□□□□ -0.61
Lire1P11260 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Lire1P11260 Gm26510-201ENSMUST00000180468 1796 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Lire1P11260 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Lire1P11260 Pomt1-201ENSMUST00000036473 2918 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Lire1P11260 Gm13135-201ENSMUST00000117628 3121 ntBASIC11.23□□□□□ -0.61
Lire1P11260 Kif19a-201ENSMUST00000084368 3433 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Lire1P11260 Foxp1-221ENSMUST00000176632 2336 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Lire1P11260 Foxp1-222ENSMUST00000176850 2339 ntAPPRIS ALT1 TSL 5 BASIC11.23□□□□□ -0.61
Lire1P11260 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Lire1P11260 Rbm3-202ENSMUST00000115615 1183 ntAPPRIS ALT1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Lire1P11260 Rbm3-203ENSMUST00000115616 1225 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Lire1P11260 Gm15547-201ENSMUST00000122152 333 ntBASIC11.23□□□□□ -0.61
Lire1P11260 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Lire1P11260 Arf4os-201ENSMUST00000166902 566 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Lire1P11260 Tmem255b-202ENSMUST00000167505 1219 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Lire1P11260 Gm17111-201ENSMUST00000169981 411 ntTSL 3 BASIC11.23□□□□□ -0.61
Lire1P11260 Mir5120-201ENSMUST00000175020 78 ntBASIC11.23□□□□□ -0.61
Lire1P11260 Tmem267-202ENSMUST00000176171 880 ntAPPRIS P1 TSL 2 BASIC11.23□□□□□ -0.61
Lire1P11260 Gm5597-201ENSMUST00000182353 1193 ntBASIC11.23□□□□□ -0.61
Lire1P11260 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC11.23□□□□□ -0.61
Lire1P11260 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC11.23□□□□□ -0.61
Lire1P11260 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Lire1P11260 Gm8176-201ENSMUST00000191297 1099 ntBASIC11.23□□□□□ -0.61
Lire1P11260 Dmrt1i-203ENSMUST00000197311 718 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Lire1P11260 Gm43416-201ENSMUST00000201916 1015 ntBASIC11.23□□□□□ -0.61
Lire1P11260 Gm44967-201ENSMUST00000207047 631 ntBASIC11.23□□□□□ -0.61
Lire1P11260 Gm5950-201ENSMUST00000213337 772 ntBASIC11.23□□□□□ -0.61
Lire1P11260 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC11.23□□□□□ -0.61
Lire1P11260 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC11.23□□□□□ -0.61
Lire1P11260 AC124171.1-201ENSMUST00000221151 567 ntTSL 5 BASIC11.23□□□□□ -0.61
Lire1P11260 AC093022.5-201ENSMUST00000226841 1079 ntBASIC11.23□□□□□ -0.61
Lire1P11260 Psmb2-201ENSMUST00000030642 859 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Lire1P11260 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Lire1P11260 Srek1-201ENSMUST00000074616 3934 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Lire1P11260 Slc5a8-201ENSMUST00000020255 5331 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Lire1P11260 Rpgrip1-202ENSMUST00000111603 5380 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Lire1P11260 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC11.23□□□□□ -0.61
Lire1P11260 Eif4ebp2-202ENSMUST00000167087 1422 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Lire1P11260 Gm5846-201ENSMUST00000193146 1414 ntBASIC11.23□□□□□ -0.61
Lire1P11260 Pga5-201ENSMUST00000025647 1417 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Lire1P11260 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Lire1P11260 Sowahc-201ENSMUST00000182161 4482 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
Lire1P11260 Slc43a1-204ENSMUST00000121114 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 68.7 ms