Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Cntnap1-201ENSMUST00000103109 5440 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Etv3-205ENSMUST00000170036 5127 ntAPPRIS P2 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Epha5-202ENSMUST00000113398 4830 ntTSL 5 BASIC9.39□□□□□ -0.91
Hoxd3P09027 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC9.39□□□□□ -0.91
Hoxd3P09027 Tfe3-203ENSMUST00000101695 2989 ntTSL 5 BASIC9.39□□□□□ -0.91
Hoxd3P09027 Gm23949-201ENSMUST00000104027 127 ntBASIC9.39□□□□□ -0.91
Hoxd3P09027 Gm23200-201ENSMUST00000104379 132 ntBASIC9.39□□□□□ -0.91
Hoxd3P09027 Foxj3-202ENSMUST00000106310 4660 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC9.39□□□□□ -0.91
Hoxd3P09027 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Sumo2-203ENSMUST00000117589 987 ntTSL 3 BASIC9.39□□□□□ -0.91
Hoxd3P09027 Gm15711-201ENSMUST00000118889 535 ntBASIC9.39□□□□□ -0.91
Hoxd3P09027 Gm12380-201ENSMUST00000119012 544 ntBASIC9.39□□□□□ -0.91
Hoxd3P09027 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC9.39□□□□□ -0.91
Hoxd3P09027 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Rprl1-201ENSMUST00000158050 327 ntBASIC9.39□□□□□ -0.91
Hoxd3P09027 Gm17040-202ENSMUST00000170597 889 ntBASIC9.39□□□□□ -0.91
Hoxd3P09027 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC9.39□□□□□ -0.91
Hoxd3P09027 Gm28287-201ENSMUST00000186612 546 ntTSL 5 BASIC9.39□□□□□ -0.91
Hoxd3P09027 Gm9916-201ENSMUST00000192943 1228 ntBASIC9.39□□□□□ -0.91
Hoxd3P09027 Gm43531-201ENSMUST00000200676 1114 ntBASIC9.39□□□□□ -0.91
Hoxd3P09027 Gm45799-208ENSMUST00000211054 490 ntAPPRIS P2 TSL 3 BASIC9.39□□□□□ -0.91
Hoxd3P09027 Speer6-ps1-203ENSMUST00000223482 979 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Ankrd2-201ENSMUST00000026172 1100 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Cga-201ENSMUST00000029975 687 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Scgb2b24-201ENSMUST00000055444 523 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC9.39□□□□□ -0.91
Hoxd3P09027 Olfr488-201ENSMUST00000072968 945 ntAPPRIS P1 BASIC9.39□□□□□ -0.91
Hoxd3P09027 Olfr862-201ENSMUST00000073765 1035 ntAPPRIS P1 BASIC9.39□□□□□ -0.91
Hoxd3P09027 Olfr887-201ENSMUST00000074681 930 ntAPPRIS P1 BASIC9.39□□□□□ -0.91
Hoxd3P09027 Ctxn2-201ENSMUST00000099452 1028 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Sorcs1-201ENSMUST00000072685 4396 ntTSL 5 BASIC9.39□□□□□ -0.91
Hoxd3P09027 CAAA01216754.1-201ENSMUST00000215882 1836 ntBASIC9.39□□□□□ -0.91
Hoxd3P09027 4921507P07Rik-201ENSMUST00000031852 2378 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC9.39□□□□□ -0.91
Hoxd3P09027 Haus6-201ENSMUST00000070607 6158 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC9.39□□□□□ -0.91
Hoxd3P09027 Kdm5c-201ENSMUST00000082177 5520 ntAPPRIS ALT2 TSL 5 BASIC9.39□□□□□ -0.91
Hoxd3P09027 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Abca7-201ENSMUST00000043866 6590 ntAPPRIS P3 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Cdk15-201ENSMUST00000114248 1477 ntAPPRIS P2 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Gm43289-201ENSMUST00000200537 1475 ntBASIC9.39□□□□□ -0.91
Hoxd3P09027 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Hook2-204ENSMUST00000210326 3080 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Dopey2-207ENSMUST00000227156 7340 ntBASIC9.39□□□□□ -0.91
Hoxd3P09027 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Gm36855-203ENSMUST00000216660 1406 ntTSL 5 BASIC9.39□□□□□ -0.91
Hoxd3P09027 Wdr31-201ENSMUST00000030087 1440 ntAPPRIS P3 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hoxd3P09027 Maml3-202ENSMUST00000121440 8288 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hoxd3P09027 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hoxd3P09027 Gm2420-201ENSMUST00000119864 2149 ntBASIC9.38□□□□□ -0.91
Hoxd3P09027 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC9.38□□□□□ -0.91
Hoxd3P09027 Crym-201ENSMUST00000033198 1383 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hoxd3P09027 Zrsr2-201ENSMUST00000090840 3867 ntTSL 2 BASIC9.38□□□□□ -0.91
Hoxd3P09027 Gm10767-202ENSMUST00000168767 2067 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hoxd3P09027 Slc4a3-202ENSMUST00000124341 7182 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hoxd3P09027 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hoxd3P09027 Dmrtc1b-203ENSMUST00000118842 1321 ntAPPRIS ALT2 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hoxd3P09027 Gm9575-201ENSMUST00000122140 1339 ntBASIC9.38□□□□□ -0.91
Hoxd3P09027 Ank3-201ENSMUST00000047061 2517 ntTSL 5 BASIC9.38□□□□□ -0.91
Hoxd3P09027 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hoxd3P09027 Baiap3-202ENSMUST00000182056 4645 ntAPPRIS P2 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hoxd3P09027 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hoxd3P09027 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC9.38□□□□□ -0.91
Hoxd3P09027 Gm15595-201ENSMUST00000120840 961 ntBASIC9.38□□□□□ -0.91
Hoxd3P09027 Gm13499-201ENSMUST00000142804 603 ntTSL 3 BASIC9.38□□□□□ -0.91
Hoxd3P09027 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Hoxd3P09027 Gm11379-201ENSMUST00000154678 381 ntTSL 3 BASIC9.38□□□□□ -0.91
Hoxd3P09027 Gm17099-201ENSMUST00000166780 412 ntTSL 3 BASIC9.38□□□□□ -0.91
Hoxd3P09027 Gm17334-201ENSMUST00000170390 907 ntAPPRIS P1 BASIC9.38□□□□□ -0.91
Hoxd3P09027 Gm25732-201ENSMUST00000175168 60 ntBASIC9.38□□□□□ -0.91
Hoxd3P09027 Gm28221-201ENSMUST00000185617 347 ntTSL 5 BASIC9.38□□□□□ -0.91
Hoxd3P09027 Gm28585-201ENSMUST00000187587 442 ntTSL 5 BASIC9.38□□□□□ -0.91
Hoxd3P09027 Gga3-201ENSMUST00000019135 3816 ntAPPRIS P3 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hoxd3P09027 Ighv4-2-201ENSMUST00000192975 362 ntBASIC9.38□□□□□ -0.91
Hoxd3P09027 Gm38283-201ENSMUST00000193041 695 ntBASIC9.38□□□□□ -0.91
Hoxd3P09027 Gm42452-201ENSMUST00000199749 617 ntBASIC9.38□□□□□ -0.91
Hoxd3P09027 Zfp799-202ENSMUST00000201499 651 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Hoxd3P09027 Gm21221-201ENSMUST00000202876 1073 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Hoxd3P09027 Mob2-203ENSMUST00000209732 977 ntAPPRIS ALT2 TSL 3 BASIC9.38□□□□□ -0.91
Hoxd3P09027 Gm45488-201ENSMUST00000210747 371 ntTSL 3 BASIC9.38□□□□□ -0.91
Hoxd3P09027 AC161250.1-201ENSMUST00000213426 1111 ntBASIC9.38□□□□□ -0.91
Hoxd3P09027 AC153532.1-201ENSMUST00000218126 1111 ntBASIC9.38□□□□□ -0.91
Hoxd3P09027 AC159297.2-201ENSMUST00000219567 1075 ntBASIC9.38□□□□□ -0.91
Hoxd3P09027 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC9.38□□□□□ -0.91
Hoxd3P09027 Spata24-201ENSMUST00000025209 701 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hoxd3P09027 Ms4a8a-201ENSMUST00000025636 1081 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hoxd3P09027 S100a1-201ENSMUST00000060738 677 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hoxd3P09027 Spata24-202ENSMUST00000096573 709 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Hoxd3P09027 4930488B22Rik-201ENSMUST00000172500 1722 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Hoxd3P09027 Sorbs1-203ENSMUST00000165212 2175 ntAPPRIS ALT2 TSL 5 BASIC9.38□□□□□ -0.91
Retrieved 100 of 76,532 protein–RNA pairs in 36.9 ms