Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Gm36987-201ENSMUST00000194704 2979 ntBASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Gm8913-201ENSMUST00000209491 641 ntBASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Gm31597-201ENSMUST00000211176 515 ntTSL 2 BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Caly-204ENSMUST00000211283 975 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Colca2-202ENSMUST00000215038 1269 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 AC110091.1-201ENSMUST00000216004 691 ntTSL 3 BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Calca-201ENSMUST00000032906 994 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Als2cl-206ENSMUST00000155014 5150 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Srfbp1-201ENSMUST00000025406 1463 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Gck-201ENSMUST00000102920 2727 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Gdpd5-208ENSMUST00000213887 2711 ntTSL 5 BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Cast-211ENSMUST00000223206 5141 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Gm28719-201ENSMUST00000187779 1757 ntBASIC11.1□□□□□ -0.63
Trim3Q9R1R2 C530043K16Rik-201ENSMUST00000201865 3109 ntBASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Acsl6-202ENSMUST00000064690 1988 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Alms1-ps1-201ENSMUST00000159498 2166 ntBASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Myzap-201ENSMUST00000093823 2283 ntAPPRIS P2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Kalrn-207ENSMUST00000114960 6452 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Acad8-201ENSMUST00000060513 2859 ntAPPRIS P2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Rnf180-205ENSMUST00000226044 3279 ntAPPRIS ALT2 BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Gm15587-201ENSMUST00000146326 3493 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Trim3Q9R1R2 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Gm45776-201ENSMUST00000212366 1522 ntBASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Gm15987-201ENSMUST00000141700 2231 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Parvg-201ENSMUST00000023074 2619 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Serpina1f-202ENSMUST00000117053 2830 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Ocln-201ENSMUST00000022140 2839 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Zfp263-201ENSMUST00000023176 3241 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Dip2c-201ENSMUST00000166299 4822 ntTSL 5 BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Grin2b-202ENSMUST00000111905 7484 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Zdbf2-202ENSMUST00000114132 12629 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Trim35-201ENSMUST00000022623 3678 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Matn2-202ENSMUST00000163455 3577 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Nol3-201ENSMUST00000014920 3176 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Slc26a2-202ENSMUST00000146409 7814 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Stx5a-213ENSMUST00000176381 2251 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Gm45272-203ENSMUST00000211111 1693 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Setdb1-202ENSMUST00000107170 4622 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Elp5-201ENSMUST00000108594 1454 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 AC113441.2-201ENSMUST00000221538 1468 ntBASIC11.09□□□□□ -0.63
Trim3Q9R1R2 A630076J17Rik-201ENSMUST00000179399 1358 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Gm23912-201ENSMUST00000104687 87 ntBASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Fam71e1-201ENSMUST00000107927 862 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Gm14508-201ENSMUST00000127049 901 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Lypd1-203ENSMUST00000159529 989 ntTSL 2 BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Ly6g6c-201ENSMUST00000173207 598 ntAPPRIS ALT2 TSL 3 BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Ly6g6c-202ENSMUST00000173478 962 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Pfn1-201ENSMUST00000018437 861 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Ighv5-7-201ENSMUST00000192302 244 ntBASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Gm37312-201ENSMUST00000195753 685 ntTSL 5 BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Acsm5-207ENSMUST00000207813 1084 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 AC025913.2-202ENSMUST00000219248 605 ntTSL 5 BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Asb18-202ENSMUST00000097656 788 ntTSL 5 BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Gm10110-202ENSMUST00000228705 3220 ntBASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Hr-205ENSMUST00000163060 5278 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Pcdhb17-201ENSMUST00000053856 4660 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Dlk1-201ENSMUST00000056110 4653 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 4833422M21Rik-202ENSMUST00000181252 2410 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Fosb-202ENSMUST00000207334 3664 ntTSL 5 BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Alg13-202ENSMUST00000070801 1802 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Igfbp4-201ENSMUST00000017637 3831 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Pfkp-201ENSMUST00000021614 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Ikzf1-201ENSMUST00000018798 1542 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Tmem92-203ENSMUST00000162809 1437 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Gm5846-201ENSMUST00000193146 1414 ntBASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Gm9008-201ENSMUST00000097218 2353 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Hoxa9-201ENSMUST00000048680 3226 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Trim3Q9R1R2 Gpr158-201ENSMUST00000055946 7171 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.63
Trim3Q9R1R2 Tut1-201ENSMUST00000096239 2747 ntAPPRIS P1 TSL 2 BASIC11.08□□□□□ -0.64
Trim3Q9R1R2 Zfp629-202ENSMUST00000084564 5829 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Trim3Q9R1R2 Aplp2-209ENSMUST00000217641 3462 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Trim3Q9R1R2 Arvcf-202ENSMUST00000115610 3829 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
Trim3Q9R1R2 Pigo-201ENSMUST00000067481 3525 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
Trim3Q9R1R2 Bcl2l14-201ENSMUST00000032321 2243 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Trim3Q9R1R2 Gm37131-201ENSMUST00000192502 1561 ntBASIC11.08□□□□□ -0.64
Trim3Q9R1R2 Gucy1a3-204ENSMUST00000193924 4710 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Trim3Q9R1R2 Aars2-201ENSMUST00000024733 3348 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Trim3Q9R1R2 Gm34785-201ENSMUST00000222571 4582 ntTSL 5 BASIC11.08□□□□□ -0.64
Trim3Q9R1R2 Grhl1-202ENSMUST00000085553 3469 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Trim3Q9R1R2 Cdc14a-201ENSMUST00000090464 4485 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Trim3Q9R1R2 Aldh4a1-201ENSMUST00000039818 3382 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Trim3Q9R1R2 Fut8-201ENSMUST00000062804 3358 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Trim3Q9R1R2 Gm11596-201ENSMUST00000105058 1079 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
Trim3Q9R1R2 Fam110a-202ENSMUST00000109863 1284 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Trim3Q9R1R2 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Trim3Q9R1R2 Gm24990-201ENSMUST00000157406 323 ntBASIC11.08□□□□□ -0.64
Trim3Q9R1R2 1700034G24Rik-202ENSMUST00000183186 1081 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Trim3Q9R1R2 Gstp-ps-201ENSMUST00000195526 631 ntBASIC11.08□□□□□ -0.64
Trim3Q9R1R2 Hax1-205ENSMUST00000197767 1092 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
Trim3Q9R1R2 Phgdh-ps1-201ENSMUST00000207540 754 ntBASIC11.08□□□□□ -0.64
Trim3Q9R1R2 Gm5363-201ENSMUST00000211927 938 ntBASIC11.08□□□□□ -0.64
Trim3Q9R1R2 Zfp706-203ENSMUST00000226453 517 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
Trim3Q9R1R2 4930569F06Rik-201ENSMUST00000036821 433 ntBASIC11.08□□□□□ -0.64
Trim3Q9R1R2 Pag1-201ENSMUST00000108384 3729 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Trim3Q9R1R2 Lrrn4-201ENSMUST00000049787 3715 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Trim3Q9R1R2 Taf9b-201ENSMUST00000055497 2633 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Trim3Q9R1R2 Spop-201ENSMUST00000107722 3063 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 43.6 ms