Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 AC027700.1-201ENSMUST00000213965 370 ntTSL 5 BASIC12.75□□□□□ -0.37
Trim54Q9ERP3 Gm18636-201ENSMUST00000218846 1066 ntBASIC12.75□□□□□ -0.37
Trim54Q9ERP3 CT009489.1-201ENSMUST00000227740 1893 ntBASIC12.75□□□□□ -0.37
Trim54Q9ERP3 Npff-201ENSMUST00000023814 540 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim54Q9ERP3 Sp4-201ENSMUST00000026367 5694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim54Q9ERP3 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim54Q9ERP3 Cd33-202ENSMUST00000039861 1791 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim54Q9ERP3 Crygs-201ENSMUST00000040592 708 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim54Q9ERP3 Rspry1-201ENSMUST00000060389 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim54Q9ERP3 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
Trim54Q9ERP3 Lst1-201ENSMUST00000097336 415 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim54Q9ERP3 Cyp2a4-201ENSMUST00000098657 1738 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim54Q9ERP3 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Trim54Q9ERP3 Bckdk-201ENSMUST00000071056 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim54Q9ERP3 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim54Q9ERP3 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim54Q9ERP3 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Trim54Q9ERP3 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Trim54Q9ERP3 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Rrnad1-201ENSMUST00000005016 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Rab11fip5-201ENSMUST00000060837 4035 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Bcl2l15-202ENSMUST00000106822 1902 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Abhd12b-203ENSMUST00000169156 1775 ntAPPRIS P2 TSL 5 BASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Drd1-201ENSMUST00000021932 3526 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Stk32b-201ENSMUST00000094836 3458 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Tssk4-201ENSMUST00000007735 1420 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Sept8-204ENSMUST00000121334 2801 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Osbp2-201ENSMUST00000070552 4097 ntAPPRIS P3 TSL 5 BASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Krtap4-16-201ENSMUST00000107437 954 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Rtn2-202ENSMUST00000108468 1076 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Gm11451-201ENSMUST00000118946 630 ntBASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Wdr53-204ENSMUST00000178573 1153 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Ccl19-ps3-201ENSMUST00000179634 324 ntBASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Gm12407-201ENSMUST00000180219 324 ntBASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Gm9358-201ENSMUST00000183067 927 ntBASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Gm27241-202ENSMUST00000185013 570 ntTSL 2 BASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Ighv5-11-201ENSMUST00000193354 371 ntBASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Ighv6-7-201ENSMUST00000193397 357 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Gm17590-202ENSMUST00000197881 1232 ntTSL 2 BASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Sox2ot-217ENSMUST00000200414 710 ntTSL 3 BASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Gm6145-204ENSMUST00000210902 1266 ntTSL 5 BASIC12.74□□□□□ -0.37
Trim54Q9ERP3 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Trim54Q9ERP3 9430078K24Rik-201ENSMUST00000218818 1082 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Gm40652-201ENSMUST00000218944 895 ntTSL 5 BASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Cby1-201ENSMUST00000023064 1119 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Odf3-201ENSMUST00000026555 1128 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Mirlet7i-201ENSMUST00000083472 85 ntBASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Flrt1-201ENSMUST00000113383 5859 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Dmbt1-206ENSMUST00000213064 5779 ntTSL 5 BASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Fnip2-203ENSMUST00000133154 7299 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Cyb561d1-201ENSMUST00000065664 4058 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Lrch1-201ENSMUST00000088970 4694 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Psmc3-201ENSMUST00000002171 1819 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Entpd4-206ENSMUST00000184973 3589 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Sf1-208ENSMUST00000131252 4353 ntAPPRIS P4 TSL 1 (best) BASIC12.74□□□□□ -0.37
Trim54Q9ERP3 Armcx2-201ENSMUST00000035559 3384 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Clspn-201ENSMUST00000048391 5027 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Rad51c-201ENSMUST00000007790 1632 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Mtmr4-201ENSMUST00000092802 5525 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Sema4a-215ENSMUST00000169222 3084 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Gnrhr-202ENSMUST00000094654 1475 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Rnf183-203ENSMUST00000107455 1432 ntAPPRIS P1 TSL 3 BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Rsrc1-206ENSMUST00000162036 1406 ntAPPRIS P2 TSL 5 BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 4930453L07Rik-201ENSMUST00000209053 1439 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Slc39a8-205ENSMUST00000167390 3533 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Pstpip2-201ENSMUST00000114741 1395 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Dtx1-201ENSMUST00000031607 4035 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Tcf4-250ENSMUST00000202458 2610 ntTSL 5 BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Adprhl1-205ENSMUST00000204916 5228 ntTSL 5 BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Gm12899-201ENSMUST00000120565 551 ntBASIC12.73□□□□□ -0.37
Trim54Q9ERP3 2610005L07Rik-201ENSMUST00000139264 948 ntBASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Adap2os-201ENSMUST00000140556 984 ntTSL 5 BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 4930471C06Rik-202ENSMUST00000143070 579 ntTSL 3 BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 4930538E20Rik-202ENSMUST00000146717 497 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Gm13830-203ENSMUST00000148916 247 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Gm15764-201ENSMUST00000150389 672 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Ager-207ENSMUST00000173992 1248 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Apoe-210ENSMUST00000174710 514 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Gm21092-201ENSMUST00000178995 955 ntBASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Gm38210-201ENSMUST00000191944 809 ntBASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Ccdc12-201ENSMUST00000019803 834 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Gadd45a-206ENSMUST00000204282 460 ntTSL 5 BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Pgpep1l-202ENSMUST00000207874 677 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Dnajc12-201ENSMUST00000043317 3025 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Gm15609-201ENSMUST00000155610 2960 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 AC166836.1-201ENSMUST00000219933 1795 ntBASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Pxylp1-201ENSMUST00000078478 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Fam177a-201ENSMUST00000177768 3922 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC12.73□□□□□ -0.37
Trim54Q9ERP3 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 227.7 ms