Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Ddah1-202ENSMUST00000120310 2291 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Gm45776-201ENSMUST00000212366 1522 ntBASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Fxyd5-212ENSMUST00000162733 2998 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Ube2v1-202ENSMUST00000109207 2041 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Adamts16-202ENSMUST00000109694 3378 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 5830417I10Rik-201ENSMUST00000135913 6190 ntBASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Nek1-208ENSMUST00000211256 4810 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Stox2-209ENSMUST00000211882 9696 ntTSL 5 BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Coa5-201ENSMUST00000027286 3863 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Slc52a2-201ENSMUST00000023220 2700 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Qrich1-202ENSMUST00000112155 3040 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Zfp853-203ENSMUST00000212715 3133 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Trim25-203ENSMUST00000107896 5590 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Lrrn1-201ENSMUST00000049285 3700 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Ighv5-2-201ENSMUST00000103442 350 ntAPPRIS ALT2 BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Tax1bp3-202ENSMUST00000108477 1153 ntTSL 5 BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Pcbd2-202ENSMUST00000124968 546 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Naa60-207ENSMUST00000150655 1166 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Gm4310-201ENSMUST00000177847 889 ntBASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Trav13d-3-201ENSMUST00000179512 391 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Trav13n-3-201ENSMUST00000179580 337 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Gm38228-201ENSMUST00000193169 1293 ntBASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Rps4l-202ENSMUST00000204242 789 ntBASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Sema3g-201ENSMUST00000090180 4540 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Tagln2-202ENSMUST00000111230 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Gm26714-201ENSMUST00000181338 1655 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Gm10851-201ENSMUST00000192087 1685 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Epb41-207ENSMUST00000105975 5235 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Pigk-201ENSMUST00000045029 1761 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Nek5-202ENSMUST00000209656 2253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Camk2g-203ENSMUST00000100837 3564 ntAPPRIS ALT1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Npbwr1-201ENSMUST00000044180 3692 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Rragd-202ENSMUST00000084747 4295 ntTSL 5 BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Rad51c-202ENSMUST00000067692 3944 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Mamld1-202ENSMUST00000114629 3346 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Serinc4-202ENSMUST00000110613 2240 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Gcc1-202ENSMUST00000090511 4650 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Arsg-202ENSMUST00000106696 1508 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Six4-202ENSMUST00000175693 6817 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Ddx56Q9D0R4 Hbs1l-201ENSMUST00000020153 2793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Nfasc-203ENSMUST00000163770 3903 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Jmjd1c-211ENSMUST00000174408 8377 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Jmjd1c-201ENSMUST00000051446 8382 ntAPPRIS P4 TSL 5 BASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Stim1-209ENSMUST00000211457 2183 ntTSL 5 BASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Lrch1-201ENSMUST00000088970 4694 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Zcchc11-202ENSMUST00000097925 5865 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Tiam1-214ENSMUST00000164263 3569 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Dcaf11-203ENSMUST00000117701 2311 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 D130043K22Rik-201ENSMUST00000006893 4973 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Ccl1-202ENSMUST00000108189 514 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Got2-ps1-201ENSMUST00000121655 1293 ntBASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Lmo3-202ENSMUST00000161450 1048 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Gm28937-201ENSMUST00000185413 695 ntBASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Gm29400-201ENSMUST00000187208 695 ntBASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Gm28662-201ENSMUST00000188446 695 ntBASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Gm28251-201ENSMUST00000188835 695 ntBASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Gm3332-201ENSMUST00000189337 928 ntBASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Gm37318-201ENSMUST00000194325 695 ntBASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Gm38017-201ENSMUST00000194768 695 ntBASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Gm37287-201ENSMUST00000195449 695 ntBASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Gm37793-201ENSMUST00000195548 695 ntBASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 1700016D08Rik-202ENSMUST00000195807 368 ntBASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Ccl1-201ENSMUST00000021043 611 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Gm45781-201ENSMUST00000212860 539 ntTSL 5 BASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Gm7293-201ENSMUST00000216682 1007 ntBASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Gm807-202ENSMUST00000224929 408 ntBASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Gm8385-201ENSMUST00000058999 643 ntBASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Rpp38-201ENSMUST00000062672 1042 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Rpl35a-201ENSMUST00000078804 491 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Sugp1-201ENSMUST00000011450 2681 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Smtn-204ENSMUST00000110011 3020 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Fetub-204ENSMUST00000170805 1508 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Ptchd3-201ENSMUST00000036690 3194 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Gm29151-201ENSMUST00000196669 2513 ntTSL 5 BASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Dach2-201ENSMUST00000067219 2520 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Cdc25a-204ENSMUST00000198308 2880 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Ddx56Q9D0R4 Hnrnpa2b1-202ENSMUST00000090002 1662 ntAPPRIS P2 TSL 5 BASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 1200007C13Rik-201ENSMUST00000143649 2455 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 Gm13990-201ENSMUST00000151391 2701 ntTSL 5 BASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 Gm37014-201ENSMUST00000194723 2253 ntBASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 Arhgef2-206ENSMUST00000175779 3065 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 Spred2-201ENSMUST00000093298 2852 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 Gm23596-201ENSMUST00000104304 132 ntBASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 Tnnt3-209ENSMUST00000105947 780 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC12.35□□□□□ -0.43
Ddx56Q9D0R4 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 46.2 ms