Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Usp40Q8BWR4 Tcf25-202ENSMUST00000108840 2582 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Usp40Q8BWR4 Pcsk7-201ENSMUST00000039059 3876 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Usp40Q8BWR4 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Usp40Q8BWR4 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Usp40Q8BWR4 Arhgap11a-201ENSMUST00000102545 4958 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
Usp40Q8BWR4 5530401A14Rik-201ENSMUST00000021044 1836 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Usp40Q8BWR4 Neu2-207ENSMUST00000172222 1715 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Usp40Q8BWR4 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Usp40Q8BWR4 Pfkfb2-208ENSMUST00000187089 1690 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Usp40Q8BWR4 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Usp40Q8BWR4 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Usp40Q8BWR4 Ighv5-9-201ENSMUST00000103448 418 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Usp40Q8BWR4 Gm25063-201ENSMUST00000104666 94 ntBASIC16.05■□□□□ 0.16
Usp40Q8BWR4 Gm16347-202ENSMUST00000149000 772 ntTSL 3 BASIC16.05■□□□□ 0.16
Usp40Q8BWR4 Gm17798-201ENSMUST00000182282 1035 ntBASIC16.05■□□□□ 0.16
Usp40Q8BWR4 Diablo-210ENSMUST00000200247 748 ntTSL 5 BASIC16.05■□□□□ 0.16
Usp40Q8BWR4 1700003I16Rik-201ENSMUST00000205198 1058 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Usp40Q8BWR4 Gm19091-201ENSMUST00000208120 978 ntBASIC16.05■□□□□ 0.16
Usp40Q8BWR4 Gm9139-201ENSMUST00000218817 700 ntBASIC16.05■□□□□ 0.16
Usp40Q8BWR4 Gm3619-201ENSMUST00000219947 775 ntBASIC16.05■□□□□ 0.16
Usp40Q8BWR4 CT030170.2-201ENSMUST00000223267 126 ntBASIC16.05■□□□□ 0.16
Usp40Q8BWR4 AC165154.1-201ENSMUST00000226661 340 ntBASIC16.05■□□□□ 0.16
Usp40Q8BWR4 Gm5468-202ENSMUST00000227851 682 ntBASIC16.05■□□□□ 0.16
Usp40Q8BWR4 Apoc4-201ENSMUST00000003071 538 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Usp40Q8BWR4 Lhfpl5-201ENSMUST00000080780 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Usp40Q8BWR4 Gm25517-201ENSMUST00000083865 134 ntBASIC16.05■□□□□ 0.16
Usp40Q8BWR4 Gm10263-201ENSMUST00000085163 300 ntBASIC16.05■□□□□ 0.16
Usp40Q8BWR4 Gm6509-201ENSMUST00000098286 1218 ntTSL 5 BASIC16.05■□□□□ 0.16
Usp40Q8BWR4 Nudt21-201ENSMUST00000034204 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Usp40Q8BWR4 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Usp40Q8BWR4 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Usp40Q8BWR4 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Usp40Q8BWR4 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Usp40Q8BWR4 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Usp40Q8BWR4 Camsap3-203ENSMUST00000207077 3832 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Usp40Q8BWR4 Sod2-201ENSMUST00000007012 3824 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Usp40Q8BWR4 Pde10a-202ENSMUST00000089085 7717 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Usp40Q8BWR4 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Usp40Q8BWR4 Eef1d-205ENSMUST00000109972 1624 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Usp40Q8BWR4 4931406C07Rik-203ENSMUST00000180339 2756 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Usp40Q8BWR4 Apol9a-201ENSMUST00000081776 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Usp40Q8BWR4 Hdac5-204ENSMUST00000107152 3788 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Usp40Q8BWR4 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Usp40Q8BWR4 Gm2464-201ENSMUST00000180838 2551 ntTSL 5 BASIC16.04■□□□□ 0.16
Usp40Q8BWR4 Dgcr8-202ENSMUST00000115633 4522 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Usp40Q8BWR4 Dmrtc1b-203ENSMUST00000118842 1321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Usp40Q8BWR4 Gm16237-201ENSMUST00000156666 1319 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Usp40Q8BWR4 Gm8899-201ENSMUST00000214635 1332 ntBASIC16.04■□□□□ 0.16
Usp40Q8BWR4 Agtrap-201ENSMUST00000030865 3996 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Usp40Q8BWR4 Zc3hc1-201ENSMUST00000080812 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Usp40Q8BWR4 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Usp40Q8BWR4 Pttg1-203ENSMUST00000101340 700 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Usp40Q8BWR4 Gm11500-201ENSMUST00000118237 601 ntBASIC16.04■□□□□ 0.16
Usp40Q8BWR4 Pttg1-205ENSMUST00000118368 696 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Usp40Q8BWR4 E130307A14Rik-204ENSMUST00000139356 701 ntTSL 3 BASIC16.04■□□□□ 0.16
Usp40Q8BWR4 4930515B02Rik-201ENSMUST00000140588 591 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Usp40Q8BWR4 4930405O22Rik-201ENSMUST00000164605 954 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Usp40Q8BWR4 Gm26134-201ENSMUST00000178484 110 ntBASIC16.04■□□□□ 0.16
Usp40Q8BWR4 Mrpl20-206ENSMUST00000185148 494 ntTSL 3 BASIC16.04■□□□□ 0.16
Usp40Q8BWR4 1700008A23Rik-201ENSMUST00000191694 691 ntBASIC16.04■□□□□ 0.16
Usp40Q8BWR4 Gm43163-201ENSMUST00000196571 442 ntBASIC16.04■□□□□ 0.16
Usp40Q8BWR4 Gm18561-201ENSMUST00000206027 804 ntBASIC16.04■□□□□ 0.16
Usp40Q8BWR4 Gm45338-204ENSMUST00000210658 1105 ntTSL 5 BASIC16.04■□□□□ 0.16
Usp40Q8BWR4 Gm45717-201ENSMUST00000211129 495 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
Usp40Q8BWR4 1700026F02Rik-203ENSMUST00000211950 1082 ntTSL 5 BASIC16.04■□□□□ 0.16
Usp40Q8BWR4 Gm19046-201ENSMUST00000221263 1298 ntBASIC16.04■□□□□ 0.16
Usp40Q8BWR4 AC122346.3-201ENSMUST00000223983 306 ntBASIC16.04■□□□□ 0.16
Usp40Q8BWR4 AC174797.2-202ENSMUST00000225729 568 ntBASIC16.04■□□□□ 0.16
Usp40Q8BWR4 Eny2-204ENSMUST00000226827 558 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
Usp40Q8BWR4 Mgp-201ENSMUST00000032342 617 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Usp40Q8BWR4 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Usp40Q8BWR4 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Usp40Q8BWR4 Ablim1-210ENSMUST00000111550 2731 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Usp40Q8BWR4 Kalrn-210ENSMUST00000114964 2693 ntTSL 5 BASIC16.04■□□□□ 0.16
Usp40Q8BWR4 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Usp40Q8BWR4 Cdh18-204ENSMUST00000165614 2162 ntTSL 5 BASIC16.04■□□□□ 0.16
Usp40Q8BWR4 Extl3-203ENSMUST00000225633 6013 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
Usp40Q8BWR4 Camk2b-207ENSMUST00000101586 1590 ntTSL 5 BASIC16.04■□□□□ 0.16
Usp40Q8BWR4 Lrrc7-205ENSMUST00000200137 7321 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Usp40Q8BWR4 Tapbp-201ENSMUST00000025161 2894 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Usp40Q8BWR4 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Usp40Q8BWR4 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Usp40Q8BWR4 Eml6-201ENSMUST00000058902 8083 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Usp40Q8BWR4 Rgma-202ENSMUST00000119206 3481 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Usp40Q8BWR4 Gm44190-201ENSMUST00000205083 1401 ntBASIC16.03■□□□□ 0.16
Usp40Q8BWR4 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Usp40Q8BWR4 Dync1i2-208ENSMUST00000112144 2565 ntAPPRIS ALT1 TSL 5 BASIC16.03■□□□□ 0.16
Usp40Q8BWR4 Tle1-201ENSMUST00000030095 2569 ntTSL 5 BASIC16.03■□□□□ 0.16
Usp40Q8BWR4 Col15a1-203ENSMUST00000107730 1755 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Usp40Q8BWR4 Gm8110-202ENSMUST00000211297 1782 ntTSL 5 BASIC16.03■□□□□ 0.16
Usp40Q8BWR4 Itga3-201ENSMUST00000001548 4861 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Usp40Q8BWR4 Mdga1-201ENSMUST00000073556 7566 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
Usp40Q8BWR4 Arntl2-202ENSMUST00000111636 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Usp40Q8BWR4 Cplx3-201ENSMUST00000045068 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Usp40Q8BWR4 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Usp40Q8BWR4 Magi1-206ENSMUST00000203688 4969 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Usp40Q8BWR4 Clcc1-202ENSMUST00000106609 2043 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Usp40Q8BWR4 Zfp568-201ENSMUST00000074322 2016 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
Usp40Q8BWR4 Gm2000-201ENSMUST00000102782 445 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 71.2 ms