Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm28778-201ENSMUST00000190734 785 ntAPPRIS P1 TSL 3 BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Gm38117-201ENSMUST00000194653 939 ntBASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Rps4l-202ENSMUST00000204242 789 ntBASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Agrp-201ENSMUST00000005849 661 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Gm21811-201ENSMUST00000096485 930 ntBASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Zdhhc20-201ENSMUST00000089473 5186 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Hk3-203ENSMUST00000126234 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Grhl2-201ENSMUST00000022895 4947 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Nol4-204ENSMUST00000097651 4549 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Alg13-202ENSMUST00000070801 1802 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Sin3b-201ENSMUST00000004494 4115 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Rnf6-201ENSMUST00000067837 2388 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Olfr658-202ENSMUST00000210641 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Olfr658-201ENSMUST00000089296 2912 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Pdp1-202ENSMUST00000095144 2506 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Mmachc-201ENSMUST00000030453 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Pcdh15-238ENSMUST00000193739 5034 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 AC154639.1-201ENSMUST00000224393 2849 ntBASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Mdh1b-201ENSMUST00000114094 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Pou2f1-209ENSMUST00000160908 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Zfp426-202ENSMUST00000115562 3557 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Hk3-202ENSMUST00000123097 2896 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Arg1-201ENSMUST00000020161 1477 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Jak3-203ENSMUST00000110013 4009 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Jak3-201ENSMUST00000051995 4019 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Tnk1-201ENSMUST00000001626 2778 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.39
Upf3bQ3ULL6 Fgd5-202ENSMUST00000113466 5621 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.39
Upf3bQ3ULL6 Mthfd1l-201ENSMUST00000043735 3535 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3bQ3ULL6 Cdc37-201ENSMUST00000019615 7851 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3bQ3ULL6 Tcof1-202ENSMUST00000175934 4595 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
Upf3bQ3ULL6 AC160410.1-201ENSMUST00000219298 1972 ntBASIC12.58□□□□□ -0.4
Upf3bQ3ULL6 Sgpp2-201ENSMUST00000036172 4002 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3bQ3ULL6 Epha5-205ENSMUST00000113403 4675 ntAPPRIS P5 TSL 5 BASIC12.58□□□□□ -0.4
Upf3bQ3ULL6 Ighg2c-201ENSMUST00000103416 1214 ntAPPRIS P5 BASIC12.58□□□□□ -0.4
Upf3bQ3ULL6 Dynlrb1-202ENSMUST00000109682 684 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3bQ3ULL6 Mageb17-ps-201ENSMUST00000117902 919 ntBASIC12.58□□□□□ -0.4
Upf3bQ3ULL6 Gm12501-201ENSMUST00000119163 529 ntBASIC12.58□□□□□ -0.4
Upf3bQ3ULL6 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3bQ3ULL6 4930515B02Rik-201ENSMUST00000140588 591 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3bQ3ULL6 Arhgef2-206ENSMUST00000175779 3065 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Upf3bQ3ULL6 Tnnt1-213ENSMUST00000178163 934 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Upf3bQ3ULL6 Gm8100-201ENSMUST00000182906 988 ntBASIC12.58□□□□□ -0.4
Upf3bQ3ULL6 Gm17087-201ENSMUST00000184183 471 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Upf3bQ3ULL6 Gm33222-201ENSMUST00000193725 654 ntTSL 3 BASIC12.58□□□□□ -0.4
Upf3bQ3ULL6 Gm42913-201ENSMUST00000197936 1853 ntBASIC12.58□□□□□ -0.4
Upf3bQ3ULL6 Gm2965-201ENSMUST00000198365 343 ntBASIC12.58□□□□□ -0.4
Upf3bQ3ULL6 Gm33474-201ENSMUST00000199486 1231 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3bQ3ULL6 Gm2762-206ENSMUST00000202502 335 ntTSL 3 BASIC12.58□□□□□ -0.4
Upf3bQ3ULL6 Gm2762-208ENSMUST00000202976 568 ntTSL 3 BASIC12.58□□□□□ -0.4
Upf3bQ3ULL6 Gm19208-201ENSMUST00000213861 912 ntBASIC12.58□□□□□ -0.4
Upf3bQ3ULL6 Acy1-208ENSMUST00000214275 1284 ntTSL 5 BASIC12.58□□□□□ -0.4
Upf3bQ3ULL6 Eif5-213ENSMUST00000222388 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3bQ3ULL6 Aldh4a1-201ENSMUST00000039818 3382 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3bQ3ULL6 Zscan29-201ENSMUST00000079024 2465 ntTSL 5 BASIC12.58□□□□□ -0.4
Upf3bQ3ULL6 Epha5-206ENSMUST00000113406 4606 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Upf3bQ3ULL6 Ehbp1l1-202ENSMUST00000075606 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3bQ3ULL6 Taf1b-201ENSMUST00000075954 2209 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3bQ3ULL6 6030458C11Rik-204ENSMUST00000228177 3156 ntBASIC12.58□□□□□ -0.4
Upf3bQ3ULL6 3110062M04Rik-201ENSMUST00000055097 3681 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3bQ3ULL6 Prkar1a-201ENSMUST00000049527 3359 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3bQ3ULL6 Osgin1-201ENSMUST00000098365 1959 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3bQ3ULL6 Psmc3-201ENSMUST00000002171 1819 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3bQ3ULL6 Gm4780-202ENSMUST00000215200 2644 ntBASIC12.58□□□□□ -0.4
Upf3bQ3ULL6 Tie1-201ENSMUST00000047421 4091 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Ncoa6-203ENSMUST00000109670 7101 ntAPPRIS P2 TSL 5 BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Pcdhb21-201ENSMUST00000061405 4705 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Mccc1os-202ENSMUST00000137198 2686 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Ap1g2-201ENSMUST00000036041 2673 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Accs-202ENSMUST00000068513 1872 ntAPPRIS P3 TSL 5 BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Npr2-201ENSMUST00000030191 3660 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Dnajc12-201ENSMUST00000043317 3025 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Dusp6-204ENSMUST00000220291 2359 ntTSL 5 BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Slc6a18-204ENSMUST00000220650 1728 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Gm38194-201ENSMUST00000194529 2211 ntBASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Ttc29-202ENSMUST00000109902 1416 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Zyg11a-201ENSMUST00000043793 2289 ntAPPRIS P2 TSL 5 BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Btbd9-201ENSMUST00000079924 6657 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Rnf144a-202ENSMUST00000062149 4812 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Lyzl6-202ENSMUST00000107014 802 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Tm2d3-203ENSMUST00000107495 1003 ntAPPRIS P4 TSL 5 BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Mrpl55-202ENSMUST00000108784 729 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Gm15515-201ENSMUST00000117827 822 ntBASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Gm11700-201ENSMUST00000119409 403 ntBASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Gm11683-201ENSMUST00000147006 918 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Ctdspl-202ENSMUST00000172464 798 ntAPPRIS ALT1 TSL 5 BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Gm27530-201ENSMUST00000184096 98 ntBASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Kdm4dl-201ENSMUST00000184843 1187 ntBASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 AC153830.1-201ENSMUST00000218522 594 ntTSL 5 BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 AC151275.1-201ENSMUST00000224870 585 ntBASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Pop4-201ENSMUST00000032585 2113 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Cmtm2b-201ENSMUST00000041973 880 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Rpl35a-201ENSMUST00000078804 491 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Gm10288-201ENSMUST00000084614 537 ntBASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 1110025L11Rik-201ENSMUST00000089104 591 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Trim35-201ENSMUST00000022623 3678 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Rad9b-201ENSMUST00000049009 1631 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms