Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Slc25a48-201ENSMUST00000021971 3374 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Fam53b-207ENSMUST00000106169 4536 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Gm38292-201ENSMUST00000192646 3045 ntBASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Prss42-201ENSMUST00000035715 1584 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Mybpc3-202ENSMUST00000137942 4134 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Rpl15-203ENSMUST00000100799 802 ntAPPRIS P1 TSL 2 BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Sparc-202ENSMUST00000108858 2115 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Gm13736-201ENSMUST00000119272 253 ntBASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Tnfrsf18-203ENSMUST00000122001 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Tmem255b-202ENSMUST00000167505 1219 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 H2al1g-201ENSMUST00000179859 509 ntAPPRIS P1 BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Anapc16-202ENSMUST00000182116 581 ntTSL 3 BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Tfr2-206ENSMUST00000198783 2973 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Gm43002-201ENSMUST00000200310 155 ntBASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Olfr1415-203ENSMUST00000204766 403 ntTSL 3 BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Gm5904-201ENSMUST00000210286 865 ntBASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Gm39404-201ENSMUST00000216350 313 ntBASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Gm7293-201ENSMUST00000216682 1007 ntBASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Fam25c-201ENSMUST00000052126 408 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Plin4-201ENSMUST00000002908 5755 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 AC122291.1-201ENSMUST00000228937 5748 ntBASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Ssh1-201ENSMUST00000077689 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Nek1-208ENSMUST00000211256 4810 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Gm14025-201ENSMUST00000145798 4242 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Phka2-203ENSMUST00000112377 3947 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Cyp26b1-202ENSMUST00000168003 4170 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Cyp26b1-201ENSMUST00000077705 4157 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Igfbp5-201ENSMUST00000027377 6006 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Gcc1-202ENSMUST00000090511 4650 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Rbm10-201ENSMUST00000064911 2793 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Arhgef28-201ENSMUST00000109426 5387 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Rab14-202ENSMUST00000113025 4346 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Bdkrb2-201ENSMUST00000001652 3792 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Sfrp4-203ENSMUST00000222464 4049 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Axl-201ENSMUST00000002677 4265 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Tmub2-201ENSMUST00000036376 1939 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Gm10545-201ENSMUST00000097612 4969 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Slc26a11-201ENSMUST00000050880 2695 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Foxp1-221ENSMUST00000176632 2336 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Foxp1-222ENSMUST00000176850 2339 ntAPPRIS ALT1 TSL 5 BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Mki67-201ENSMUST00000033310 10061 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Prdx2-202ENSMUST00000109733 1590 ntAPPRIS P1 TSL 2 BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Mmp21-202ENSMUST00000122136 1599 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Rbm8a2-201ENSMUST00000104983 1338 ntAPPRIS P1 BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Gm7538-201ENSMUST00000200918 1348 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Wdr82-201ENSMUST00000020490 3747 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Fn1-214ENSMUST00000188894 8043 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Gm36940-201ENSMUST00000194281 2036 ntBASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Ces5a-203ENSMUST00000212009 2042 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Phactr1-201ENSMUST00000066928 2013 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Pom121l2-201ENSMUST00000017126 2960 ntAPPRIS P4 BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Dsc2-201ENSMUST00000039247 4630 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Gm43242-201ENSMUST00000199507 1776 ntBASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Gpatch2l-204ENSMUST00000221368 4355 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Ascc2-202ENSMUST00000109930 4844 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Ccpg1-201ENSMUST00000037977 3151 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Tex45-203ENSMUST00000161680 1526 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Olfr1419-202ENSMUST00000213954 2918 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Plagl2-201ENSMUST00000056924 5485 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Fip1l1-204ENSMUST00000113536 4769 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Plxna4os1-201ENSMUST00000150314 1977 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Gm12316-201ENSMUST00000125853 406 ntTSL 5 BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 F630206G17Rik-201ENSMUST00000137002 685 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Olfr668-201ENSMUST00000164391 957 ntAPPRIS P1 BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Gm8738-201ENSMUST00000172606 329 ntBASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Ly6g6c-201ENSMUST00000173207 598 ntAPPRIS ALT2 TSL 3 BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Ly6g6c-202ENSMUST00000173478 962 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Nat8f7-202ENSMUST00000179613 686 ntAPPRIS P1 BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Gm5706-201ENSMUST00000181525 993 ntBASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Gm27246-201ENSMUST00000183611 1240 ntTSL 5 BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Gm42797-201ENSMUST00000197573 494 ntTSL 3 BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Hax1-206ENSMUST00000197786 857 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Gm18711-201ENSMUST00000199341 750 ntBASIC11.42□□□□□ -0.58
Col28a1Q2UY11 1700011D18Rik-201ENSMUST00000205762 277 ntBASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Gm45418-202ENSMUST00000210693 649 ntTSL 5 BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Nsd1-205ENSMUST00000224693 852 ntBASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Bpifa1-201ENSMUST00000028985 1106 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Krtap19-9a-201ENSMUST00000062005 168 ntAPPRIS P1 BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Olfr667-201ENSMUST00000071362 981 ntAPPRIS P1 BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Olfr666-201ENSMUST00000081116 957 ntAPPRIS P1 BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Gm11559-201ENSMUST00000092694 1096 ntAPPRIS P1 BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Sgpp2-201ENSMUST00000036172 4002 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Serpinf2-201ENSMUST00000043696 2192 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Gm43522-201ENSMUST00000196697 1922 ntBASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Setx-201ENSMUST00000061578 10970 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Hdc-201ENSMUST00000028838 2392 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Tapbpl-201ENSMUST00000043422 2352 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Gfra1-209ENSMUST00000169850 3224 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Tcf4-240ENSMUST00000201781 2779 ntTSL 5 BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Dmp1-201ENSMUST00000066708 2764 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Ing1-206ENSMUST00000210740 1866 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 C5ar1-202ENSMUST00000168818 2540 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Col28a1Q2UY11 Wdr26-208ENSMUST00000162963 6452 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms