Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Gm37406-201ENSMUST00000192478 500 ntTSL 3 BASIC10.08□□□□□ -0.8
Col8a1Q00780 A930036K24Rik-201ENSMUST00000194146 1200 ntBASIC10.08□□□□□ -0.8
Col8a1Q00780 1700086D15Rik-201ENSMUST00000020855 1092 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
Col8a1Q00780 9430078K24Rik-203ENSMUST00000220293 638 ntTSL 3 BASIC10.08□□□□□ -0.8
Col8a1Q00780 Amtn-201ENSMUST00000073363 1022 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Col8a1Q00780 Krtap6-2-201ENSMUST00000082065 786 ntAPPRIS P1 BASIC10.08□□□□□ -0.8
Col8a1Q00780 Gm10775-201ENSMUST00000099425 1203 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Col8a1Q00780 Crybg2-201ENSMUST00000121391 4761 ntAPPRIS P2 TSL 1 (best) BASIC10.08□□□□□ -0.8
Col8a1Q00780 Prss47-202ENSMUST00000203968 1353 ntAPPRIS P5 TSL 5 BASIC10.08□□□□□ -0.8
Col8a1Q00780 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Col8a1Q00780 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Col8a1Q00780 A530032D15Rik-201ENSMUST00000160792 1492 ntAPPRIS P2 TSL 1 (best) BASIC10.08□□□□□ -0.8
Col8a1Q00780 Phkg2-201ENSMUST00000033086 1570 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Col8a1Q00780 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
Col8a1Q00780 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC10.08□□□□□ -0.8
Col8a1Q00780 P2rx7-203ENSMUST00000100737 4936 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Col8a1Q00780 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Col8a1Q00780 Gm29480-201ENSMUST00000188589 1655 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Col8a1Q00780 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC10.08□□□□□ -0.8
Col8a1Q00780 Slc38a5-203ENSMUST00000115591 1853 ntAPPRIS ALT2 TSL 5 BASIC10.08□□□□□ -0.8
Col8a1Q00780 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC10.08□□□□□ -0.8
Col8a1Q00780 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC10.08□□□□□ -0.8
Col8a1Q00780 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Col8a1Q00780 Jmjd1c-211ENSMUST00000174408 8377 ntAPPRIS ALT2 TSL 5 BASIC10.08□□□□□ -0.8
Col8a1Q00780 Jmjd1c-201ENSMUST00000051446 8382 ntAPPRIS P4 TSL 5 BASIC10.08□□□□□ -0.8
Col8a1Q00780 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC10.08□□□□□ -0.8
Col8a1Q00780 Txlna-202ENSMUST00000084264 4847 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Col8a1Q00780 Cttnbp2nl-201ENSMUST00000077548 4946 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Col8a1Q00780 Bmp7-201ENSMUST00000009143 3670 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Col8a1Q00780 Dmrtc1b-203ENSMUST00000118842 1321 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Col8a1Q00780 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Col8a1Q00780 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Col8a1Q00780 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Col8a1Q00780 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Col8a1Q00780 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Col8a1Q00780 Baiap2l1-201ENSMUST00000055190 3247 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Col8a1Q00780 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC10.07□□□□□ -0.8
Col8a1Q00780 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Col8a1Q00780 Fgd5-202ENSMUST00000113466 5621 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Col8a1Q00780 Mecom-202ENSMUST00000108270 5692 ntAPPRIS ALT2 TSL 5 BASIC10.07□□□□□ -0.8
Col8a1Q00780 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Col8a1Q00780 Tepsin-201ENSMUST00000026442 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Col8a1Q00780 Btnl2-202ENSMUST00000178562 2563 ntAPPRIS ALT2 TSL 5 BASIC10.07□□□□□ -0.8
Col8a1Q00780 Zfp108-203ENSMUST00000206777 2562 ntAPPRIS P2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Col8a1Q00780 Btnl2-201ENSMUST00000025198 2564 ntAPPRIS P2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Col8a1Q00780 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Col8a1Q00780 Gm20125-205ENSMUST00000208005 1979 ntTSL 5 BASIC10.07□□□□□ -0.8
Col8a1Q00780 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Col8a1Q00780 Epm2aip1-202ENSMUST00000135807 4245 ntAPPRIS P1 TSL 2 BASIC10.07□□□□□ -0.8
Col8a1Q00780 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Col8a1Q00780 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Col8a1Q00780 1700125H20Rik-202ENSMUST00000100681 687 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Col8a1Q00780 Rpl10-ps1-201ENSMUST00000119438 645 ntBASIC10.07□□□□□ -0.8
Col8a1Q00780 Gm14213-201ENSMUST00000119778 768 ntBASIC10.07□□□□□ -0.8
Col8a1Q00780 Gm12164-201ENSMUST00000121695 551 ntBASIC10.07□□□□□ -0.8
Col8a1Q00780 Gm12453-201ENSMUST00000121981 331 ntBASIC10.07□□□□□ -0.8
Col8a1Q00780 Rbm3os-201ENSMUST00000124018 839 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Col8a1Q00780 Gm13091-201ENSMUST00000128800 469 ntTSL 5 BASIC10.07□□□□□ -0.8
Col8a1Q00780 Gm13572-201ENSMUST00000153675 559 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Col8a1Q00780 4930557F10Rik-201ENSMUST00000155432 630 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Col8a1Q00780 AC158605.1-201ENSMUST00000156803 764 ntTSL 3 BASIC10.07□□□□□ -0.8
Col8a1Q00780 Gm20536-201ENSMUST00000172588 406 ntTSL 3 BASIC10.07□□□□□ -0.8
Col8a1Q00780 Gm25998-201ENSMUST00000175397 53 ntBASIC10.07□□□□□ -0.8
Col8a1Q00780 Ighv1-2-201ENSMUST00000195325 378 ntBASIC10.07□□□□□ -0.8
Col8a1Q00780 Gm43275-201ENSMUST00000202053 1020 ntBASIC10.07□□□□□ -0.8
Col8a1Q00780 Fxyd4-203ENSMUST00000203082 815 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Col8a1Q00780 AC113082.1-201ENSMUST00000217324 327 ntBASIC10.07□□□□□ -0.8
Col8a1Q00780 Gm18514-201ENSMUST00000218980 436 ntBASIC10.07□□□□□ -0.8
Col8a1Q00780 Gm36423-202ENSMUST00000222215 1298 ntTSL 5 BASIC10.07□□□□□ -0.8
Col8a1Q00780 Gm14005-208ENSMUST00000223654 681 ntBASIC10.07□□□□□ -0.8
Col8a1Q00780 Olfr272-201ENSMUST00000051600 962 ntAPPRIS P1 BASIC10.07□□□□□ -0.8
Col8a1Q00780 Gm16380-201ENSMUST00000077997 478 ntBASIC10.07□□□□□ -0.8
Col8a1Q00780 Nfya-212ENSMUST00000162460 3706 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.8
Col8a1Q00780 Fbln7-202ENSMUST00000110324 3228 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
Col8a1Q00780 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.8
Col8a1Q00780 Arid4a-201ENSMUST00000046305 4998 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
Col8a1Q00780 Zfp94-201ENSMUST00000032673 2529 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.8
Col8a1Q00780 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Col8a1Q00780 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Col8a1Q00780 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Col8a1Q00780 5830417I10Rik-201ENSMUST00000135913 6190 ntBASIC10.07□□□□□ -0.8
Col8a1Q00780 Myo7a-204ENSMUST00000107128 7506 ntAPPRIS ALT2 TSL 5 BASIC10.07□□□□□ -0.8
Col8a1Q00780 Nol4-204ENSMUST00000097651 4549 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Col8a1Q00780 Gm10728-201ENSMUST00000194292 1829 ntBASIC10.07□□□□□ -0.8
Col8a1Q00780 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.8
Col8a1Q00780 Arsg-202ENSMUST00000106696 1508 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Col8a1Q00780 Enpp7-202ENSMUST00000106273 1408 ntAPPRIS ALT2 TSL 5 BASIC10.07□□□□□ -0.8
Col8a1Q00780 Gm20554-201ENSMUST00000177421 2352 ntBASIC10.07□□□□□ -0.8
Col8a1Q00780 Gm44056-201ENSMUST00000204623 1427 ntBASIC10.07□□□□□ -0.8
Col8a1Q00780 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Col8a1Q00780 Zmiz1-208ENSMUST00000162645 7482 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Col8a1Q00780 Numa1-201ENSMUST00000084852 7180 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Col8a1Q00780 Eogt-201ENSMUST00000054344 4424 ntAPPRIS P2 TSL 1 (best) BASIC10.06□□□□□ -0.8
Col8a1Q00780 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC10.06□□□□□ -0.8
Col8a1Q00780 Gm37269-201ENSMUST00000193906 1891 ntBASIC10.06□□□□□ -0.8
Col8a1Q00780 CT009489.1-201ENSMUST00000227740 1893 ntBASIC10.06□□□□□ -0.8
Col8a1Q00780 Rab11fip5-201ENSMUST00000060837 4035 ntAPPRIS P3 TSL 1 (best) BASIC10.06□□□□□ -0.8
Col8a1Q00780 Ripk4-202ENSMUST00000113743 3743 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Col8a1Q00780 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Col8a1Q00780 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Retrieved 100 of 76,532 protein–RNA pairs in 30.2 ms