Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Ldhd-201ENSMUST00000070004 2273 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cd40lgP27548 Bloc1s5-201ENSMUST00000035899 5634 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cd40lgP27548 Ank1-206ENSMUST00000117662 6257 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cd40lgP27548 Lig1-210ENSMUST00000165964 3166 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
Cd40lgP27548 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Cd40lgP27548 Lrrfip2-213ENSMUST00000216430 1525 ntTSL 5 BASIC10.91□□□□□ -0.66
Cd40lgP27548 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC10.91□□□□□ -0.66
Cd40lgP27548 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cd40lgP27548 Itk-202ENSMUST00000101306 1185 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Cd40lgP27548 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC10.91□□□□□ -0.66
Cd40lgP27548 Il15ra-204ENSMUST00000114832 468 ntTSL 5 BASIC10.91□□□□□ -0.66
Cd40lgP27548 Gm12997-201ENSMUST00000120207 640 ntBASIC10.91□□□□□ -0.66
Cd40lgP27548 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC10.91□□□□□ -0.66
Cd40lgP27548 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC10.91□□□□□ -0.66
Cd40lgP27548 4930483J18Rik-202ENSMUST00000138715 1093 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Cd40lgP27548 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cd40lgP27548 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cd40lgP27548 Adtrp-204ENSMUST00000179758 1046 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
Cd40lgP27548 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC10.91□□□□□ -0.66
Cd40lgP27548 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC10.91□□□□□ -0.66
Cd40lgP27548 Gstp-ps-201ENSMUST00000195526 631 ntBASIC10.91□□□□□ -0.66
Cd40lgP27548 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC10.91□□□□□ -0.66
Cd40lgP27548 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC10.91□□□□□ -0.66
Cd40lgP27548 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Cd40lgP27548 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Cd40lgP27548 Pebp4-201ENSMUST00000022678 1079 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cd40lgP27548 Cga-201ENSMUST00000029975 687 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cd40lgP27548 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cd40lgP27548 Kcnk7-201ENSMUST00000052448 1226 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cd40lgP27548 Cryga-201ENSMUST00000061497 625 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cd40lgP27548 Ppp1r2-ps3-201ENSMUST00000078012 627 ntBASIC10.91□□□□□ -0.66
Cd40lgP27548 Clec4b2-201ENSMUST00000088455 1174 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cd40lgP27548 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cd40lgP27548 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC10.91□□□□□ -0.66
Cd40lgP27548 Mical3-217ENSMUST00000207889 9204 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
Cd40lgP27548 Vcan-202ENSMUST00000109544 5702 ntTSL 5 BASIC10.91□□□□□ -0.66
Cd40lgP27548 E2f8-202ENSMUST00000119223 3499 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cd40lgP27548 Gmps-201ENSMUST00000029405 8105 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cd40lgP27548 9030407P20Rik-201ENSMUST00000180933 2310 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Cd40lgP27548 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Cd40lgP27548 Xirp1-201ENSMUST00000111635 5839 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cd40lgP27548 Myh4-201ENSMUST00000018632 6016 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
Cd40lgP27548 Ehbp1l1-202ENSMUST00000075606 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cd40lgP27548 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cd40lgP27548 Hao1-201ENSMUST00000028704 2045 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cd40lgP27548 Lig1-201ENSMUST00000098814 3091 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
Cd40lgP27548 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cd40lgP27548 Rbl2-210ENSMUST00000211136 4504 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cd40lgP27548 Fam120b-201ENSMUST00000055352 4518 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cd40lgP27548 Fam163a-201ENSMUST00000015628 3882 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cd40lgP27548 Nxph1-202ENSMUST00000160300 2815 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cd40lgP27548 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Cd40lgP27548 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cd40lgP27548 Ptgdr-201ENSMUST00000095959 3187 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cd40lgP27548 Mei1-201ENSMUST00000089178 3974 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
Cd40lgP27548 Ikzf1-201ENSMUST00000018798 1542 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Cd40lgP27548 Kir3dl2-202ENSMUST00000113108 1932 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cd40lgP27548 Cacng5-201ENSMUST00000039071 3705 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cd40lgP27548 Dna2-203ENSMUST00000131422 4122 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cd40lgP27548 C2cd5-203ENSMUST00000171349 4292 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
Cd40lgP27548 Adgre5-203ENSMUST00000109802 2867 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
Cd40lgP27548 Sh3gl3-206ENSMUST00000179318 1489 ntTSL 5 BASIC10.9□□□□□ -0.66
Cd40lgP27548 Fbp1-201ENSMUST00000092888 1479 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cd40lgP27548 Gm22133-201ENSMUST00000102082 109 ntBASIC10.9□□□□□ -0.66
Cd40lgP27548 Cstl1-202ENSMUST00000109954 454 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Cd40lgP27548 Zar1l-201ENSMUST00000118769 895 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cd40lgP27548 Naa60-207ENSMUST00000150655 1166 ntAPPRIS P1 TSL 2 BASIC10.9□□□□□ -0.66
Cd40lgP27548 Gm17099-201ENSMUST00000166780 412 ntTSL 3 BASIC10.9□□□□□ -0.66
Cd40lgP27548 Ftl1-ps2-201ENSMUST00000169477 549 ntBASIC10.9□□□□□ -0.66
Cd40lgP27548 Hax1-205ENSMUST00000197767 1092 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
Cd40lgP27548 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC10.9□□□□□ -0.66
Cd40lgP27548 Gm8913-201ENSMUST00000209491 641 ntBASIC10.9□□□□□ -0.66
Cd40lgP27548 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC10.9□□□□□ -0.66
Cd40lgP27548 Mcpt1-201ENSMUST00000022836 1014 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cd40lgP27548 Ms4a8a-201ENSMUST00000025636 1081 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cd40lgP27548 Cbx1-202ENSMUST00000079702 912 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Cd40lgP27548 Rpl30-201ENSMUST00000009039 570 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cd40lgP27548 Camkk1-201ENSMUST00000092937 3424 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cd40lgP27548 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cd40lgP27548 Rab11fip1-203ENSMUST00000209377 3769 ntTSL 5 BASIC10.9□□□□□ -0.66
Cd40lgP27548 Gm44913-201ENSMUST00000208060 2990 ntBASIC10.9□□□□□ -0.66
Cd40lgP27548 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Cd40lgP27548 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cd40lgP27548 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cd40lgP27548 Pik3cd-203ENSMUST00000105689 3132 ntAPPRIS ALT1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cd40lgP27548 Tspyl4-201ENSMUST00000047935 3879 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
Cd40lgP27548 Ank2-221ENSMUST00000182994 2715 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Cd40lgP27548 Fads1-201ENSMUST00000010807 3456 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cd40lgP27548 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.67
Cd40lgP27548 Rpap1-201ENSMUST00000048493 4744 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Cd40lgP27548 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC10.9□□□□□ -0.67
Cd40lgP27548 Cngb1-203ENSMUST00000120044 3243 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.67
Cd40lgP27548 Hjurp-201ENSMUST00000054674 4878 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.67
Cd40lgP27548 Madd-202ENSMUST00000066473 5974 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.67
Cd40lgP27548 Pars2-202ENSMUST00000106781 3046 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.67
Cd40lgP27548 Samd4-206ENSMUST00000137543 6874 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.67
Cd40lgP27548 Thsd4-206ENSMUST00000171654 8522 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.67
Cd40lgP27548 A630076J17Rik-201ENSMUST00000179399 1358 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Cd40lgP27548 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Cd40lgP27548 Eif5a2-201ENSMUST00000060500 5027 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 55.7 ms