Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Tagln3-201ENSMUST00000096057 1240 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Vti1aO89116 Gm10338-201ENSMUST00000096148 984 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
Vti1aO89116 Mpp4-204ENSMUST00000186477 1885 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Vti1aO89116 Kcnj5-203ENSMUST00000216033 2440 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Vti1aO89116 Pdxdc1-201ENSMUST00000023361 4228 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Vti1aO89116 Gm9951-202ENSMUST00000149618 1772 ntTSL 2 BASIC12.73□□□□□ -0.37
Vti1aO89116 Gcc1-202ENSMUST00000090511 4650 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Vti1aO89116 Aldoc-202ENSMUST00000102478 1700 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Vti1aO89116 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Vti1aO89116 Sec16a-202ENSMUST00000114082 8797 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Vti1aO89116 Gatad2a-201ENSMUST00000065169 3812 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Vti1aO89116 Mrvi1-202ENSMUST00000125758 5953 ntAPPRIS ALT2 TSL 2 BASIC12.73□□□□□ -0.37
Vti1aO89116 Cngb1-203ENSMUST00000120044 3243 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Vti1aO89116 Il21r-202ENSMUST00000206103 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Vti1aO89116 Ercc8-201ENSMUST00000054835 2111 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Vti1aO89116 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Vti1aO89116 Hsd3b4-201ENSMUST00000179429 1575 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
Vti1aO89116 Gm10681-203ENSMUST00000186215 1575 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
Vti1aO89116 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Vti1aO89116 Dmbt1-201ENSMUST00000084509 6243 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Vti1aO89116 Fut1-201ENSMUST00000008605 2580 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Vti1aO89116 Cast-211ENSMUST00000223206 5141 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Vti1aO89116 Shtn1-201ENSMUST00000047511 4081 ntAPPRIS P4 TSL 1 (best) BASIC12.73□□□□□ -0.37
Vti1aO89116 1700082M22Rik-201ENSMUST00000067136 2022 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Vti1aO89116 Fgd5-202ENSMUST00000113466 5621 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Vti1aO89116 Zfp810-201ENSMUST00000086278 3238 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Vti1aO89116 CT025624.1-201ENSMUST00000224007 2700 ntBASIC12.72□□□□□ -0.37
Vti1aO89116 Pex26-201ENSMUST00000088561 4093 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Vti1aO89116 Polm-202ENSMUST00000109837 2697 ntTSL 5 BASIC12.72□□□□□ -0.37
Vti1aO89116 A830082K12Rik-201ENSMUST00000123998 2203 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Vti1aO89116 Celf2-205ENSMUST00000114927 1721 ntAPPRIS ALT1 TSL 5 BASIC12.72□□□□□ -0.37
Vti1aO89116 Mgll-201ENSMUST00000089449 3867 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Vti1aO89116 Ctrc-202ENSMUST00000105781 784 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Vti1aO89116 Ifitm10-203ENSMUST00000105988 824 ntAPPRIS P4 TSL 2 BASIC12.72□□□□□ -0.37
Vti1aO89116 Rab15-203ENSMUST00000121716 739 ntTSL 3 BASIC12.72□□□□□ -0.37
Vti1aO89116 Gm4131-201ENSMUST00000186010 1264 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Vti1aO89116 Creb1-209ENSMUST00000190348 1260 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Vti1aO89116 Gm33201-201ENSMUST00000204791 855 ntTSL 3 BASIC12.72□□□□□ -0.37
Vti1aO89116 AC127270.1-201ENSMUST00000221441 491 ntTSL 3 BASIC12.72□□□□□ -0.37
Vti1aO89116 AC134869.3-201ENSMUST00000225581 343 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Vti1aO89116 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Vti1aO89116 Spata13-207ENSMUST00000160973 7467 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Vti1aO89116 Fbxl12-201ENSMUST00000086458 2056 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Vti1aO89116 Arhgap1-202ENSMUST00000111329 3201 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Vti1aO89116 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC12.72□□□□□ -0.37
Vti1aO89116 Padi6-201ENSMUST00000038749 2333 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Vti1aO89116 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC12.72□□□□□ -0.37
Vti1aO89116 Apbb2-215ENSMUST00000162349 3362 ntAPPRIS P3 TSL 5 BASIC12.72□□□□□ -0.37
Vti1aO89116 Apbb2-201ENSMUST00000087256 3362 ntAPPRIS ALT1 TSL 5 BASIC12.72□□□□□ -0.37
Vti1aO89116 Fancc-217ENSMUST00000163091 2995 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Vti1aO89116 Ash2l-210ENSMUST00000166078 2234 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Vti1aO89116 Cad-204ENSMUST00000201182 6529 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Vti1aO89116 Slc25a22-203ENSMUST00000106007 2546 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Vti1aO89116 Mroh7-201ENSMUST00000106770 4346 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Vti1aO89116 Alg12-201ENSMUST00000043087 1793 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Vti1aO89116 AC154517.2-201ENSMUST00000220829 2458 ntBASIC12.71□□□□□ -0.37
Vti1aO89116 Nfe2l1-210ENSMUST00000167110 3547 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.37
Vti1aO89116 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
Vti1aO89116 Lig1-201ENSMUST00000098814 3091 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Vti1aO89116 Sstr5-201ENSMUST00000051864 2733 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Vti1aO89116 Lnx1-206ENSMUST00000121690 2302 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Vti1aO89116 Csrnp3-207ENSMUST00000145598 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Vti1aO89116 A630075F10Rik-201ENSMUST00000180895 1913 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Vti1aO89116 Gm11628-201ENSMUST00000117568 171 ntBASIC12.71□□□□□ -0.37
Vti1aO89116 Gm14314-201ENSMUST00000118225 1015 ntBASIC12.71□□□□□ -0.37
Vti1aO89116 Gm12036-201ENSMUST00000120008 530 ntBASIC12.71□□□□□ -0.37
Vti1aO89116 Rpsa-ps4-201ENSMUST00000121691 888 ntBASIC12.71□□□□□ -0.37
Vti1aO89116 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC12.71□□□□□ -0.37
Vti1aO89116 Gm8194-201ENSMUST00000159783 859 ntBASIC12.71□□□□□ -0.37
Vti1aO89116 AC161424.1-202ENSMUST00000213570 767 ntTSL 3 BASIC12.71□□□□□ -0.37
Vti1aO89116 Colca2-202ENSMUST00000215038 1269 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Vti1aO89116 Gm4797-201ENSMUST00000219075 1283 ntBASIC12.71□□□□□ -0.37
Vti1aO89116 AC151275.1-201ENSMUST00000224870 585 ntBASIC12.71□□□□□ -0.37
Vti1aO89116 Gm5705-201ENSMUST00000066241 711 ntBASIC12.71□□□□□ -0.37
Vti1aO89116 Pdhx-201ENSMUST00000011058 2506 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Vti1aO89116 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
Vti1aO89116 Fancc-214ENSMUST00000161977 3111 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
Vti1aO89116 Ppp1r3b-204ENSMUST00000211648 4386 ntAPPRIS P1 TSL 3 BASIC12.71□□□□□ -0.37
Vti1aO89116 Ccdc114-201ENSMUST00000038720 2460 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Vti1aO89116 Speg-201ENSMUST00000087122 10801 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Vti1aO89116 Adgrl3-214ENSMUST00000120445 5230 ntTSL 5 BASIC12.71□□□□□ -0.38
Vti1aO89116 Dlec1-206ENSMUST00000140326 5815 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.38
Vti1aO89116 Calm1-201ENSMUST00000001204 3987 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Vti1aO89116 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Vti1aO89116 Adcy9-201ENSMUST00000005719 4457 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
Vti1aO89116 Rabep1-203ENSMUST00000100928 3860 ntTSL 5 BASIC12.71□□□□□ -0.38
Vti1aO89116 Fam49a-201ENSMUST00000069005 1771 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Vti1aO89116 Fam78a-201ENSMUST00000056406 4107 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Vti1aO89116 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Vti1aO89116 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Vti1aO89116 Eif4g1-217ENSMUST00000143939 5114 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.38
Vti1aO89116 Cyth1-203ENSMUST00000106302 3119 ntAPPRIS P4 TSL 1 (best) BASIC12.71□□□□□ -0.38
Vti1aO89116 Col6a4-201ENSMUST00000121963 7371 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.38
Vti1aO89116 Rnf170-201ENSMUST00000014022 3929 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 Tspan2-201ENSMUST00000029451 4484 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 Csf1-202ENSMUST00000118593 3058 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 Olfr1419-203ENSMUST00000217617 3087 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Vti1aO89116 4933412E12Rik-201ENSMUST00000217853 1698 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 Mff-209ENSMUST00000160972 1358 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Vti1aO89116 Egr1-202ENSMUST00000165033 3036 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 47.5 ms