Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 1700047I17Rik2-201ENSMUST00000177978 3863 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Maml2-202ENSMUST00000159294 6404 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Slc25a13-203ENSMUST00000188414 3121 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
Vps28Q9D1C8 Gcc1-202ENSMUST00000090511 4650 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
Vps28Q9D1C8 Pex26-201ENSMUST00000088561 4093 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Slc25a22-203ENSMUST00000106007 2546 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Ncoa3-202ENSMUST00000109252 5757 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Kremen1-201ENSMUST00000020662 4856 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Gm5608-201ENSMUST00000210253 2290 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Zfp568-201ENSMUST00000074322 2016 ntAPPRIS P3 TSL 5 BASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Ebf3-203ENSMUST00000168203 3724 ntAPPRIS ALT1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Gtf2e1-201ENSMUST00000023525 3084 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Fgfr1op-201ENSMUST00000024636 3077 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Tgfb2-206ENSMUST00000195201 3485 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Tpm1-201ENSMUST00000030185 1797 ntAPPRIS ALT1 TSL 2 BASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Gm9034-201ENSMUST00000182071 1005 ntBASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Cyb561-206ENSMUST00000184086 1130 ntTSL 5 BASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Gm42682-201ENSMUST00000198349 1265 ntBASIC12.08□□□□□ -0.48
Vps28Q9D1C8 AC167229.2-201ENSMUST00000218902 675 ntTSL 5 BASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Spcs1-203ENSMUST00000226374 592 ntBASIC12.08□□□□□ -0.48
Vps28Q9D1C8 AC131330.1-201ENSMUST00000227814 1015 ntBASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Prop1-201ENSMUST00000051159 1133 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Nudt7-201ENSMUST00000066514 935 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Mir219a-1-201ENSMUST00000083621 110 ntBASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Lrp8-203ENSMUST00000106732 2648 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Gfap-201ENSMUST00000067444 2648 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Hdac6-201ENSMUST00000033501 4142 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Maats1-201ENSMUST00000023501 2750 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Axl-202ENSMUST00000085948 3899 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Ffar1-201ENSMUST00000052700 4175 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Tti2-202ENSMUST00000209851 3133 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Gm40377-201ENSMUST00000204604 2015 ntBASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Ces1d-201ENSMUST00000034172 2004 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Tmeff2-202ENSMUST00000114565 2718 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Cfap52-201ENSMUST00000021287 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Prex1-202ENSMUST00000099080 5818 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Arl8b-201ENSMUST00000032196 4443 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Ahi1-201ENSMUST00000105525 4851 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Vps28Q9D1C8 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Adgrl3-214ENSMUST00000120445 5230 ntTSL 5 BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Zbtb44-201ENSMUST00000115222 8861 ntTSL 5 BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Gm6580-201ENSMUST00000117504 1357 ntBASIC12.07□□□□□ -0.48
Vps28Q9D1C8 5330439B14Rik-201ENSMUST00000194811 1392 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Madd-211ENSMUST00000111373 5641 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Lnx1-201ENSMUST00000039744 2727 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Gm43075-201ENSMUST00000198613 3905 ntBASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Plekhn1-202ENSMUST00000105571 2004 ntTSL 5 BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Rpl35a-204ENSMUST00000115078 500 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Gm11331-201ENSMUST00000119764 288 ntBASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Gm11941-201ENSMUST00000119904 610 ntBASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Gm11683-201ENSMUST00000147006 918 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Gm13115-201ENSMUST00000156438 620 ntTSL 5 BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Tmem40-205ENSMUST00000166254 811 ntAPPRIS P3 TSL 5 BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Gm8888-201ENSMUST00000177677 381 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 3110045C21Rik-201ENSMUST00000180638 1135 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Gm28982-201ENSMUST00000186895 512 ntTSL 3 BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Gm5733-201ENSMUST00000190232 939 ntBASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Gm42980-201ENSMUST00000200582 1028 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Atraid-205ENSMUST00000201136 894 ntAPPRIS ALT2 TSL 3 BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 1700027J07Rik-202ENSMUST00000215747 1060 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 AC151275.1-201ENSMUST00000224870 585 ntBASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Gm1821-202ENSMUST00000227415 750 ntBASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Zfp810-201ENSMUST00000086278 3238 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Nup210-201ENSMUST00000032179 7037 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Terb1-201ENSMUST00000064576 2950 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Gm9008-201ENSMUST00000097218 2353 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Samd11-204ENSMUST00000218788 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Kif26b-201ENSMUST00000160789 6216 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Lipe-201ENSMUST00000003207 3613 ntAPPRIS P4 TSL 1 (best) BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Axin2-201ENSMUST00000052915 4260 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Fam114a2-201ENSMUST00000020831 2557 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Cisd2-201ENSMUST00000029815 3361 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Tspan2-201ENSMUST00000029451 4484 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Neu4-201ENSMUST00000050890 4511 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Sorcs1-201ENSMUST00000072685 4396 ntTSL 5 BASIC12.07□□□□□ -0.48
Vps28Q9D1C8 Tfcp2-201ENSMUST00000009877 3250 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Vps28Q9D1C8 2900026A02Rik-203ENSMUST00000212276 5864 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Vps28Q9D1C8 Chmp3-201ENSMUST00000059462 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Vps28Q9D1C8 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 216.5 ms