Protein–RNA interactions for Protein: Q91Y16

Pcdha3, Protocadherin alpha 3, mousemouse

Predictions only

Length 942 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha3Q91Y16 Tnnt1-213ENSMUST00000178163 934 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Pcdha3Q91Y16 Gm42629-201ENSMUST00000199063 1102 ntBASIC12.35□□□□□ -0.43
Pcdha3Q91Y16 Fxyd1-217ENSMUST00000206860 594 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Pcdha3Q91Y16 Gm4657-201ENSMUST00000213839 787 ntTSL 3 BASIC12.35□□□□□ -0.43
Pcdha3Q91Y16 Prr15l-202ENSMUST00000062172 1242 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Pcdha3Q91Y16 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
Pcdha3Q91Y16 Aldh4a1-201ENSMUST00000039818 3382 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Pcdha3Q91Y16 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC12.35□□□□□ -0.43
Pcdha3Q91Y16 Ptchd3-201ENSMUST00000036690 3194 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Pcdha3Q91Y16 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC12.35□□□□□ -0.43
Pcdha3Q91Y16 Zc3h18-205ENSMUST00000176629 3672 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Pcdha3Q91Y16 Slc35a4-202ENSMUST00000050476 2362 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Pcdha3Q91Y16 Gdap2-202ENSMUST00000106997 2014 ntTSL 2 BASIC12.35□□□□□ -0.43
Pcdha3Q91Y16 4931415C17Rik-202ENSMUST00000131064 2255 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Pcdha3Q91Y16 Ldhd-201ENSMUST00000070004 2273 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Pcdha3Q91Y16 Vezf1-201ENSMUST00000018521 4583 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Pcdha3Q91Y16 Gm34785-201ENSMUST00000222571 4582 ntTSL 5 BASIC12.35□□□□□ -0.43
Pcdha3Q91Y16 Cops7a-202ENSMUST00000112439 1328 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Pcdha3Q91Y16 Nr1i3-202ENSMUST00000075469 1305 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Pcdha3Q91Y16 D030045P18Rik-204ENSMUST00000215085 2186 ntTSL 5 BASIC12.35□□□□□ -0.43
Pcdha3Q91Y16 Bmp3-201ENSMUST00000031278 6548 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Pcdha3Q91Y16 Epb42-201ENSMUST00000023987 2695 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdha3Q91Y16 Cyb561d1-203ENSMUST00000106655 4275 ntAPPRIS P4 TSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdha3Q91Y16 Add1-202ENSMUST00000052836 2337 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Pcdha3Q91Y16 Cdk15-201ENSMUST00000114248 1477 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdha3Q91Y16 Gm20658-201ENSMUST00000175871 1489 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdha3Q91Y16 Spop-201ENSMUST00000107722 3063 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdha3Q91Y16 A930024N18Rik-201ENSMUST00000181251 3955 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdha3Q91Y16 Nrap-203ENSMUST00000095947 5214 ntTSL 5 BASIC12.34□□□□□ -0.43
Pcdha3Q91Y16 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdha3Q91Y16 Cc2d1a-202ENSMUST00000117424 3262 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Pcdha3Q91Y16 Kdm2b-202ENSMUST00000046073 5180 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdha3Q91Y16 Wwtr1-201ENSMUST00000029380 4697 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdha3Q91Y16 Nek5-202ENSMUST00000209656 2253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdha3Q91Y16 Gm43622-201ENSMUST00000200140 2019 ntBASIC12.34□□□□□ -0.43
Pcdha3Q91Y16 Galnt9-202ENSMUST00000165856 1541 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdha3Q91Y16 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
Pcdha3Q91Y16 Gm11660-201ENSMUST00000120955 412 ntBASIC12.34□□□□□ -0.43
Pcdha3Q91Y16 Gm12589-201ENSMUST00000153767 638 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdha3Q91Y16 Gm14249-201ENSMUST00000156239 1017 ntTSL 5 BASIC12.34□□□□□ -0.43
Pcdha3Q91Y16 9330159M07Rik-202ENSMUST00000180783 1044 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdha3Q91Y16 Mir6927-201ENSMUST00000184494 71 ntBASIC12.34□□□□□ -0.43
Pcdha3Q91Y16 Ip6k2-202ENSMUST00000192028 1199 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdha3Q91Y16 Gm42980-201ENSMUST00000200582 1028 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdha3Q91Y16 Gm39460-201ENSMUST00000215728 1266 ntTSL 5 BASIC12.34□□□□□ -0.43
Pcdha3Q91Y16 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdha3Q91Y16 S100a1-201ENSMUST00000060738 677 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdha3Q91Y16 Ifi27-205ENSMUST00000085065 977 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdha3Q91Y16 Gm36957-201ENSMUST00000192982 2824 ntBASIC12.34□□□□□ -0.43
Pcdha3Q91Y16 Slc19a1-209ENSMUST00000144234 2309 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdha3Q91Y16 Ticam2-201ENSMUST00000070084 2340 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdha3Q91Y16 Tfr2-208ENSMUST00000199054 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdha3Q91Y16 Gabbr1-203ENSMUST00000172792 4036 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdha3Q91Y16 Pitpnm2-201ENSMUST00000086123 6620 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdha3Q91Y16 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdha3Q91Y16 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdha3Q91Y16 Prx-204ENSMUST00000125990 4298 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Pcdha3Q91Y16 Serpina1f-202ENSMUST00000117053 2830 ntTSL 1 (best) BASIC12.33□□□□□ -0.43
Pcdha3Q91Y16 Flnc-202ENSMUST00000101617 8939 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Pcdha3Q91Y16 Efna1-202ENSMUST00000118587 1632 ntTSL 1 (best) BASIC12.33□□□□□ -0.43
Pcdha3Q91Y16 Cry2-201ENSMUST00000090559 3976 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 6030443J06Rik-202ENSMUST00000181374 1353 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 Jade2-203ENSMUST00000109091 6099 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 Grm7-202ENSMUST00000172951 4197 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 Adamts1-201ENSMUST00000023610 4884 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 Gm10851-201ENSMUST00000192087 1685 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 Ifnar1-201ENSMUST00000023689 3909 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 Gm12766-201ENSMUST00000140298 1823 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 Gjd4-201ENSMUST00000041007 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 Mbd1-202ENSMUST00000224047 2838 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 Ncmap-202ENSMUST00000105857 958 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 Gm12217-201ENSMUST00000118858 696 ntBASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 Gm15852-201ENSMUST00000159701 915 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 Gm20442-201ENSMUST00000174630 492 ntTSL 3 BASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 Gm7003-201ENSMUST00000195089 312 ntBASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 Olfr981-201ENSMUST00000059859 997 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 Rpl10a-ps2-201ENSMUST00000071184 642 ntBASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 Gm26448-201ENSMUST00000082446 203 ntBASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 Foxk1-201ENSMUST00000072837 7439 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 Nono-201ENSMUST00000033673 2562 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 Cysltr2-202ENSMUST00000169168 1744 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 Myo18a-210ENSMUST00000130305 5450 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 Dgcr8-201ENSMUST00000009321 4320 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 Plekhn1-202ENSMUST00000105571 2004 ntTSL 5 BASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 Cfap52-201ENSMUST00000021287 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 Gfod2-201ENSMUST00000013294 4352 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 Gm18262-201ENSMUST00000222560 1946 ntBASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 Frmd4a-202ENSMUST00000091497 6208 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Pcdha3Q91Y16 Trak1-213ENSMUST00000211439 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Pcdha3Q91Y16 Plxna1-201ENSMUST00000049845 5810 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Pcdha3Q91Y16 Hoxa9-201ENSMUST00000048680 3226 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 44.9 ms