Protein–RNA interactions for Protein: Q8C6K9

Col6a6, Collagen alpha-6(VI) chain, mousemouse

Predictions only

Length 2,265 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a6Q8C6K9 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Gm18782-201ENSMUST00000209023 1399 ntBASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Rtl5-204ENSMUST00000188731 4325 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Tcf4-252ENSMUST00000202477 1873 ntTSL 5 BASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Tcl1-202ENSMUST00000101071 1299 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Cisd3-203ENSMUST00000107585 586 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Olfr1267-ps1-201ENSMUST00000118957 930 ntAPPRIS P1 BASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Sumo3-203ENSMUST00000124024 776 ntTSL 2 BASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Hmgn2-208ENSMUST00000136327 772 ntTSL 2 BASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Tcl1-204ENSMUST00000176579 760 ntTSL 2 BASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 AC238811.4-201ENSMUST00000178019 1246 ntBASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 AC238940.3-201ENSMUST00000178830 1246 ntBASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Gm7238-201ENSMUST00000206467 973 ntBASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Gm8342-201ENSMUST00000209839 757 ntBASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Cplx3-203ENSMUST00000217015 540 ntTSL 2 BASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Gm4065-202ENSMUST00000218911 986 ntTSL 3 BASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Pcgf5-204ENSMUST00000224772 1266 ntAPPRIS ALT1 BASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Arhgef33-207ENSMUST00000224966 490 ntBASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Cxcl1-201ENSMUST00000031327 953 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 C8g-202ENSMUST00000040042 1150 ntAPPRIS P3 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Actg1-201ENSMUST00000062147 876 ntTSL 3 BASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Sod2-201ENSMUST00000007012 3824 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Immt-202ENSMUST00000101301 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Gm8155-201ENSMUST00000216363 1612 ntBASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Sstr3-201ENSMUST00000053239 3928 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 AC164702.1-201ENSMUST00000220135 2212 ntBASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Gm42748-201ENSMUST00000199354 2341 ntBASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Rbm6-201ENSMUST00000035201 3999 ntAPPRIS P3 TSL 1 (best) BASIC10.62□□□□□ -0.71
Col6a6Q8C6K9 Cc2d1a-202ENSMUST00000117424 3262 ntAPPRIS ALT2 TSL 5 BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Mir181d-201ENSMUST00000102383 72 ntBASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Gm22594-201ENSMUST00000104251 130 ntBASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 0610010K14Rik-206ENSMUST00000108576 576 ntAPPRIS ALT1 TSL 2 BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Gm13019-201ENSMUST00000120000 276 ntBASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Saxo2-202ENSMUST00000126478 430 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Slfn5os-201ENSMUST00000127074 574 ntTSL 2 BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 A430057M04Rik-201ENSMUST00000169054 3835 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 2700099C18Rik-202ENSMUST00000182402 1275 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Shisa5-205ENSMUST00000197099 742 ntTSL 3 BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 2310074N15Rik-201ENSMUST00000198276 582 ntBASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Znhit6-206ENSMUST00000199033 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Gm44711-201ENSMUST00000205414 1264 ntBASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Gng8-202ENSMUST00000205459 522 ntAPPRIS P1 TSL 3 BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Isoc2b-205ENSMUST00000208816 820 ntAPPRIS P1 TSL 3 BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Gm9661-201ENSMUST00000221611 1122 ntBASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Rnf183-201ENSMUST00000079420 573 ntAPPRIS P1 BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Ephb2-203ENSMUST00000105846 3653 ntAPPRIS ALT2 TSL 5 BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Gm21358-201ENSMUST00000191645 1659 ntBASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Ttbk2-203ENSMUST00000085840 11152 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 4930520O04Rik-202ENSMUST00000131898 2660 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Slc1a4-202ENSMUST00000109594 3926 ntAPPRIS P2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Megf11-203ENSMUST00000118485 3944 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 AC123834.1-201ENSMUST00000225346 2043 ntBASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Acnat1-202ENSMUST00000107697 1446 ntAPPRIS ALT2 TSL 5 BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Meikin-201ENSMUST00000094193 1433 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Ccdc89-201ENSMUST00000061391 2093 ntAPPRIS P1 BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Klk7-201ENSMUST00000032955 1895 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Gm25063-201ENSMUST00000104666 94 ntBASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Nudt7-204ENSMUST00000134593 707 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Ly6e-207ENSMUST00000187606 735 ntAPPRIS P1 TSL 2 BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Nmbr-206ENSMUST00000190114 662 ntTSL 3 BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Gm9916-201ENSMUST00000192943 1228 ntBASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Zfp655-203ENSMUST00000196069 1150 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 AC153152.3-201ENSMUST00000222188 1135 ntBASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Me3-202ENSMUST00000032856 4485 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Rpl15-202ENSMUST00000080281 1922 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Dync1i2-208ENSMUST00000112144 2565 ntAPPRIS ALT1 TSL 5 BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 4932431P20Rik-201ENSMUST00000098602 1340 ntBASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Pcdh10-202ENSMUST00000170695 8234 ntAPPRIS P3 TSL 1 (best) BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Ino80c-203ENSMUST00000141489 2207 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Susd5-201ENSMUST00000135338 4083 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC10.61□□□□□ -0.71
Col6a6Q8C6K9 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC10.61□□□□□ -0.71
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms