Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Gm8908-201ENSMUST00000121633 1024 ntBASIC11.98□□□□□ -0.49
Sh3rf1Q69ZI1 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC11.98□□□□□ -0.49
Sh3rf1Q69ZI1 Dnajc25-204ENSMUST00000152199 1141 ntTSL 5 BASIC11.98□□□□□ -0.49
Sh3rf1Q69ZI1 Gm22902-201ENSMUST00000158488 302 ntBASIC11.98□□□□□ -0.49
Sh3rf1Q69ZI1 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC11.98□□□□□ -0.49
Sh3rf1Q69ZI1 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sh3rf1Q69ZI1 Mir5120-201ENSMUST00000175020 78 ntBASIC11.98□□□□□ -0.49
Sh3rf1Q69ZI1 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC11.98□□□□□ -0.49
Sh3rf1Q69ZI1 Erdr1-201ENSMUST00000177591 774 ntAPPRIS P5 TSL 5 BASIC11.98□□□□□ -0.49
Sh3rf1Q69ZI1 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Sh3rf1Q69ZI1 Gm8856-201ENSMUST00000185254 1144 ntBASIC11.98□□□□□ -0.49
Sh3rf1Q69ZI1 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC11.98□□□□□ -0.49
Sh3rf1Q69ZI1 Gm28450-201ENSMUST00000187349 638 ntBASIC11.98□□□□□ -0.49
Sh3rf1Q69ZI1 Gm37319-201ENSMUST00000193500 636 ntBASIC11.98□□□□□ -0.49
Sh3rf1Q69ZI1 4930539M17Rik-201ENSMUST00000194792 846 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Sh3rf1Q69ZI1 Gm31048-201ENSMUST00000196103 1061 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Sh3rf1Q69ZI1 Gm44651-201ENSMUST00000207343 372 ntBASIC11.98□□□□□ -0.49
Sh3rf1Q69ZI1 Gm32468-201ENSMUST00000214199 1040 ntTSL 5 BASIC11.98□□□□□ -0.49
Sh3rf1Q69ZI1 AC134328.1-201ENSMUST00000222693 667 ntTSL 2 BASIC11.98□□□□□ -0.49
Sh3rf1Q69ZI1 AC123665.1-201ENSMUST00000228204 438 ntBASIC11.98□□□□□ -0.49
Sh3rf1Q69ZI1 Gm20696-201ENSMUST00000155466 3560 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
Sh3rf1Q69ZI1 Cers6-201ENSMUST00000028426 7038 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sh3rf1Q69ZI1 Acad8-202ENSMUST00000120367 2885 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Sh3rf1Q69ZI1 Armc3-202ENSMUST00000114640 2818 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sh3rf1Q69ZI1 Gm37580-201ENSMUST00000192408 2800 ntBASIC11.98□□□□□ -0.49
Sh3rf1Q69ZI1 Nfatc2-209ENSMUST00000171689 2742 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Sh3rf1Q69ZI1 Stat3-202ENSMUST00000103114 6042 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Sh3rf1Q69ZI1 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC11.98□□□□□ -0.49
Sh3rf1Q69ZI1 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sh3rf1Q69ZI1 Caln1-202ENSMUST00000111287 2106 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sh3rf1Q69ZI1 Map4-203ENSMUST00000163979 3320 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Sh3rf1Q69ZI1 Cyp4b1-201ENSMUST00000102707 1892 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 Nt5dc2-206ENSMUST00000227794 1858 ntAPPRIS ALT2 BASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 Dcun1d3-202ENSMUST00000098080 3072 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 AC126444.1-201ENSMUST00000225938 1768 ntBASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 4930488B22Rik-201ENSMUST00000172500 1722 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 Timm22-201ENSMUST00000021203 2817 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 Tcp11l2-201ENSMUST00000020223 2725 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 Tex2-202ENSMUST00000103070 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 Asph-202ENSMUST00000078139 6694 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 Bahcc1-202ENSMUST00000118987 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 Lexm-204ENSMUST00000189032 1549 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 Fzd4-201ENSMUST00000058755 6720 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 Zfp597-201ENSMUST00000090522 5668 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 Rpl13-ps1-201ENSMUST00000121801 668 ntBASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 Naa60-207ENSMUST00000150655 1166 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 Gm17028-201ENSMUST00000170026 704 ntTSL 3 BASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 Gm27023-201ENSMUST00000182372 285 ntBASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 Gm43050-201ENSMUST00000201062 338 ntTSL 2 BASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 Gm45224-201ENSMUST00000208203 414 ntBASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 Bet1l-207ENSMUST00000211527 298 ntTSL 5 BASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 AC153974.2-201ENSMUST00000218577 1025 ntBASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 Abhd11os-203ENSMUST00000222613 363 ntBASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 Wdr75-201ENSMUST00000027139 2953 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 Egfr-202ENSMUST00000102884 2943 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 Tbc1d1-204ENSMUST00000121370 5419 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 Gm6189-201ENSMUST00000164487 2082 ntBASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 Rad17-201ENSMUST00000022136 2839 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 Vps54-201ENSMUST00000006221 4323 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 Gmppb-202ENSMUST00000112295 2702 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 Actr1a-201ENSMUST00000040270 2742 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 Tcf4-251ENSMUST00000202474 1810 ntTSL 5 BASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 Aoc2-201ENSMUST00000041095 2543 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 9030407P20Rik-201ENSMUST00000180933 2310 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Sh3rf1Q69ZI1 Pigc-201ENSMUST00000028021 2196 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Sh3rf1Q69ZI1 Wdr17-211ENSMUST00000175915 4619 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
Sh3rf1Q69ZI1 Hdac7-201ENSMUST00000079838 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Sh3rf1Q69ZI1 Hap1-202ENSMUST00000138603 3316 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
Sh3rf1Q69ZI1 Gm43908-201ENSMUST00000205074 1472 ntBASIC11.96□□□□□ -0.49
Sh3rf1Q69ZI1 Gfra1-209ENSMUST00000169850 3224 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Sh3rf1Q69ZI1 Rbm8a-206ENSMUST00000200647 2620 ntTSL 2 BASIC11.96□□□□□ -0.49
Sh3rf1Q69ZI1 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Sh3rf1Q69ZI1 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Sh3rf1Q69ZI1 Gm8522-201ENSMUST00000118416 1929 ntBASIC11.96□□□□□ -0.49
Sh3rf1Q69ZI1 Klk1b16-201ENSMUST00000005933 1387 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Sh3rf1Q69ZI1 Xrra1-202ENSMUST00000207855 1334 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
Sh3rf1Q69ZI1 Vmn1r45-202ENSMUST00000226167 2893 ntBASIC11.96□□□□□ -0.49
Sh3rf1Q69ZI1 Zfp526-201ENSMUST00000055604 3380 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Sh3rf1Q69ZI1 Spats2l-201ENSMUST00000163239 2313 ntTSL 5 BASIC11.96□□□□□ -0.49
Sh3rf1Q69ZI1 Gm7857-201ENSMUST00000117957 358 ntBASIC11.96□□□□□ -0.49
Sh3rf1Q69ZI1 Gm16099-202ENSMUST00000151873 660 ntTSL 5 BASIC11.96□□□□□ -0.49
Sh3rf1Q69ZI1 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Sh3rf1Q69ZI1 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Sh3rf1Q69ZI1 Gm37083-201ENSMUST00000195784 711 ntTSL 2 BASIC11.96□□□□□ -0.49
Sh3rf1Q69ZI1 Rassf4-202ENSMUST00000203029 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Sh3rf1Q69ZI1 4930404N11Rik-201ENSMUST00000020456 691 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Sh3rf1Q69ZI1 Gm44044-201ENSMUST00000205178 1089 ntBASIC11.96□□□□□ -0.49
Sh3rf1Q69ZI1 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC11.96□□□□□ -0.49
Sh3rf1Q69ZI1 4930578M07Rik-202ENSMUST00000212946 552 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Sh3rf1Q69ZI1 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC11.96□□□□□ -0.49
Sh3rf1Q69ZI1 AC154222.2-201ENSMUST00000225848 607 ntBASIC11.96□□□□□ -0.49
Sh3rf1Q69ZI1 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Sh3rf1Q69ZI1 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 50.4 ms