Protein–RNA interactions for Protein: Q5R1F6

Trav5d-4, T cell receptor alpha variable 5D-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5d-4Q5R1F6 Pcdhga6-201ENSMUST00000195823 4733 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Trav5d-4Q5R1F6 Gm20125-205ENSMUST00000208005 1979 ntTSL 5 BASIC10.12□□□□□ -0.79
Trav5d-4Q5R1F6 Tpcn2-201ENSMUST00000058022 2993 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Rabgef1-203ENSMUST00000119797 2690 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Cacna1c-205ENSMUST00000112825 7577 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Fam161a-203ENSMUST00000109557 1947 ntAPPRIS P1 TSL 2 BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Sept11-201ENSMUST00000074733 5028 ntAPPRIS P3 TSL 1 (best) BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Arg1-201ENSMUST00000020161 1477 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 AC127242.1-201ENSMUST00000222861 1464 ntTSL 3 BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Lbh-201ENSMUST00000024857 3064 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Slc33a1-201ENSMUST00000029402 3150 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Msra-201ENSMUST00000067927 1860 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Zfp773-201ENSMUST00000032622 3028 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Slc2a7-201ENSMUST00000059893 1578 ntAPPRIS P1 TSL 5 BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Gm43321-201ENSMUST00000198897 2409 ntBASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Rnf180-205ENSMUST00000226044 3279 ntAPPRIS ALT2 BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Kifc2-201ENSMUST00000004294 3143 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Gm12012-201ENSMUST00000118857 1066 ntBASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Gm13350-201ENSMUST00000120519 479 ntBASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Gm17376-201ENSMUST00000166016 84 ntBASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Gm6114-201ENSMUST00000182472 968 ntBASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 C530044C16Rik-202ENSMUST00000205217 1239 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 AC159205.5-202ENSMUST00000224849 386 ntBASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Cbx1-202ENSMUST00000079702 912 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Rnf214-208ENSMUST00000161187 2847 ntAPPRIS ALT2 TSL 1 (best) BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Prrt3-204ENSMUST00000205075 1956 ntAPPRIS ALT2 TSL 2 BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Tex2-201ENSMUST00000042780 4934 ntAPPRIS P2 TSL 1 (best) BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Ush1c-201ENSMUST00000009667 3072 ntAPPRIS P3 TSL 1 (best) BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Mark3-208ENSMUST00000221753 2394 ntTSL 5 BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Adamts14-202ENSMUST00000120336 3645 ntAPPRIS ALT2 TSL 5 BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Uimc1-201ENSMUST00000026997 2931 ntAPPRIS P2 TSL 1 (best) BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 C2cd5-203ENSMUST00000171349 4292 ntAPPRIS P1 TSL 5 BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Rpap1-202ENSMUST00000099529 4813 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Sox9-201ENSMUST00000000579 4135 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Gm43807-201ENSMUST00000200678 1781 ntBASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Gm5422-201ENSMUST00000050717 2721 ntBASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Gm3836-201ENSMUST00000211377 1613 ntBASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Fxyd5-212ENSMUST00000162733 2998 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Nars2-201ENSMUST00000044466 3778 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Wapl-202ENSMUST00000090027 4185 ntAPPRIS ALT2 TSL 5 BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Mob4-205ENSMUST00000162364 2840 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Dis3l-201ENSMUST00000068367 3605 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
Trav5d-4Q5R1F6 Katnal2-207ENSMUST00000137354 1482 ntTSL 5 BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Gm17767-201ENSMUST00000189410 1470 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Mfsd13b-201ENSMUST00000033166 1883 ntAPPRIS P2 TSL 1 (best) BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Nrros-208ENSMUST00000143682 3577 ntAPPRIS ALT2 TSL 1 (best) BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Sirt2-209ENSMUST00000170068 1585 ntTSL 5 BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 AC123857.2-201ENSMUST00000225756 1582 ntBASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Ibsp-201ENSMUST00000031246 2068 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 1700088E04Rik-212ENSMUST00000190959 1403 ntAPPRIS P1 TSL 5 BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Gm10851-201ENSMUST00000192087 1685 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Zfp108-202ENSMUST00000205982 2577 ntAPPRIS P2 TSL 1 (best) BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Scn10a-201ENSMUST00000084787 6416 ntAPPRIS P2 TSL 5 BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Art2b-202ENSMUST00000209526 2819 ntAPPRIS ALT2 TSL 5 BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Bdnf-205ENSMUST00000111045 3973 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Ccdc28b-202ENSMUST00000106035 821 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Gm12715-201ENSMUST00000121430 1128 ntBASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Psma1-203ENSMUST00000135570 960 ntTSL 3 BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Rps13-201ENSMUST00000170953 589 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Fam166b-206ENSMUST00000171134 1198 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Defb22-201ENSMUST00000028966 628 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Psma1-201ENSMUST00000033008 1201 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Sash3-201ENSMUST00000033427 2677 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Prx-202ENSMUST00000098644 4841 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Prodh-205ENSMUST00000136776 2041 ntAPPRIS ALT2 TSL 5 BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Trim45-204ENSMUST00000134993 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Gstt2-208ENSMUST00000220440 2254 ntAPPRIS P1 TSL 5 BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Acsl1-202ENSMUST00000110371 2100 ntTSL 5 BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Tpra1-219ENSMUST00000203345 3359 ntTSL 5 BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 AC091458.1-201ENSMUST00000220902 1361 ntBASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Erich3-203ENSMUST00000189969 3460 ntBASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Lnx2-201ENSMUST00000016664 4557 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Nmrk1-203ENSMUST00000159572 1706 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Coro6-204ENSMUST00000102493 2804 ntAPPRIS ALT1 TSL 5 BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 4930432B10Rik-201ENSMUST00000181688 2085 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Zfp46-201ENSMUST00000069195 4639 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Gm10728-201ENSMUST00000194292 1829 ntBASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 Tmem136-201ENSMUST00000061833 3503 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
Trav5d-4Q5R1F6 4930563E18Rik-201ENSMUST00000180948 1553 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
Trav5d-4Q5R1F6 Spata13-207ENSMUST00000160973 7467 ntAPPRIS P3 TSL 1 (best) BASIC10.09□□□□□ -0.79
Retrieved 100 of 76,532 protein–RNA pairs in 89.6 ms