Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm4310-201ENSMUST00000177847 889 ntBASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Gm29539-201ENSMUST00000188031 758 ntTSL 3 BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Gm37312-201ENSMUST00000195753 685 ntTSL 5 BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Bet1l-207ENSMUST00000211527 298 ntTSL 5 BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Gm45781-201ENSMUST00000212860 539 ntTSL 5 BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 AC113082.1-201ENSMUST00000217324 327 ntBASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Abhd14b-210ENSMUST00000217496 631 ntTSL 5 BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Crabp2-201ENSMUST00000005019 931 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Tut1-201ENSMUST00000096239 2747 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Zfp467-204ENSMUST00000114559 3163 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Tmx3-201ENSMUST00000025515 4611 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Ncapd2-201ENSMUST00000043848 4629 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Gm43773-201ENSMUST00000198548 2162 ntBASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Wdr59-202ENSMUST00000038193 5083 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Myoc-201ENSMUST00000028020 2074 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Brap-202ENSMUST00000111765 3861 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Dpysl5-201ENSMUST00000088081 5022 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Sowahc-201ENSMUST00000182161 4482 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Sparc-201ENSMUST00000018737 2300 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Apbb2-216ENSMUST00000162366 6540 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Cyp2c53-ps-203ENSMUST00000176493 1443 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Slc6a13-201ENSMUST00000064580 2234 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Ttc14-201ENSMUST00000099153 9661 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Fam49a-201ENSMUST00000069005 1771 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Zfp341-201ENSMUST00000081926 3299 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Ttc17-203ENSMUST00000111237 4409 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Olfr1349-204ENSMUST00000207820 1325 ntAPPRIS P1 TSL 3 BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Tor1aip1-202ENSMUST00000097527 4234 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Tagln2-202ENSMUST00000111230 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 Lsp1-211ENSMUST00000149521 1910 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 Gm8146-201ENSMUST00000192106 1847 ntBASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 Ngef-202ENSMUST00000068681 3109 ntAPPRIS P4 TSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 Lmbr1-201ENSMUST00000055195 4926 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 Plekha6-203ENSMUST00000186917 4820 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 Akt2-201ENSMUST00000051356 2923 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 H2-Q1-202ENSMUST00000105041 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 Adamts10-201ENSMUST00000087623 4043 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 Ift22-205ENSMUST00000200157 3071 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 AC164426.2-201ENSMUST00000225993 2492 ntBASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 Pros1-201ENSMUST00000023629 3303 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 Ncmap-202ENSMUST00000105857 958 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 Camk1d-202ENSMUST00000114987 1295 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 Zfp36l1-ps-201ENSMUST00000118349 899 ntBASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 Sstr2-203ENSMUST00000146390 2143 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 Gm14249-201ENSMUST00000156239 1017 ntTSL 5 BASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 Ccdc127-205ENSMUST00000162672 677 ntTSL 3 BASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 Gm16505-201ENSMUST00000179981 232 ntBASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 Gm29707-202ENSMUST00000198744 659 ntTSL 3 BASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 AU022133-201ENSMUST00000200601 873 ntBASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 Gm6450-201ENSMUST00000200896 574 ntBASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 Mt3-202ENSMUST00000211915 440 ntTSL 3 BASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 CT485787.1-201ENSMUST00000225617 968 ntBASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 Rpl9-ps6-201ENSMUST00000078034 691 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 Cdc25a-204ENSMUST00000198308 2880 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 Serpina1b-203ENSMUST00000186166 1762 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 Scn8a-208ENSMUST00000200963 5814 ntTSL 5 BASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 Rpap1-203ENSMUST00000110793 5458 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 4833439L19Rik-208ENSMUST00000153065 2502 ntTSL 5 BASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 Fbxl22-201ENSMUST00000056890 3935 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 Angpt4-201ENSMUST00000028955 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 Snx29-203ENSMUST00000122168 2096 ntTSL 5 BASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 Adgrl3-214ENSMUST00000120445 5230 ntTSL 5 BASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 Pip5kl1-201ENSMUST00000055304 1577 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 Gm15609-201ENSMUST00000155610 2960 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 Samd11-204ENSMUST00000218788 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Upf3bQ3ULL6 Tfdp1-201ENSMUST00000170909 1700 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Gm43760-201ENSMUST00000202120 3015 ntBASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Mip-201ENSMUST00000026455 2144 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Rbm10-207ENSMUST00000177738 2790 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Rbm10-201ENSMUST00000064911 2793 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Dcaf11-202ENSMUST00000117236 2538 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Vsig10l-201ENSMUST00000107977 3836 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 March7-202ENSMUST00000102747 2271 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Abca7-201ENSMUST00000043866 6590 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Rnf17-201ENSMUST00000095793 5264 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Gm43321-201ENSMUST00000198897 2409 ntBASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Gcc1-202ENSMUST00000090511 4650 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Gm10787-201ENSMUST00000099552 1548 ntTSL 2 BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Taf6-202ENSMUST00000110936 2308 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Ecd-201ENSMUST00000022344 3132 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Trit1-201ENSMUST00000102649 2074 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Nrg1-211ENSMUST00000208497 2096 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Gm23200-201ENSMUST00000104379 132 ntBASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Gm14724-201ENSMUST00000118400 537 ntBASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Gm12217-201ENSMUST00000118858 696 ntBASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Gm15207-201ENSMUST00000119259 442 ntBASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Gm8566-201ENSMUST00000120174 465 ntBASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Nrg4-204ENSMUST00000130158 1000 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Prdx5-203ENSMUST00000149261 755 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Ubl5-206ENSMUST00000161486 794 ntTSL 2 BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 H2-Q3-201ENSMUST00000172583 608 ntBASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Gm26759-201ENSMUST00000181773 1251 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Upf3bQ3ULL6 Mir6927-201ENSMUST00000184494 71 ntBASIC12.59□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 39.5 ms