Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Oas1f-201ENSMUST00000057814 1480 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Trpm1-217ENSMUST00000206263 5493 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Olfr1420-201ENSMUST00000072784 1444 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Gabra1-201ENSMUST00000020707 4688 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Coq8a-201ENSMUST00000027766 4026 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Cd2bp2-207ENSMUST00000206026 2906 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Eng-201ENSMUST00000009705 3422 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Abhd18-203ENSMUST00000159774 4455 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Arhgap31-201ENSMUST00000023487 7964 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Gm11222-201ENSMUST00000119005 738 ntBASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Gm17111-201ENSMUST00000169981 411 ntTSL 3 BASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Gm29585-203ENSMUST00000188089 835 ntTSL 5 BASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Gm18584-201ENSMUST00000203098 964 ntBASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Gm30459-201ENSMUST00000206203 1193 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Gm16519-201ENSMUST00000092011 489 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Poldip3-201ENSMUST00000058793 3297 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Tyk2-203ENSMUST00000214454 4770 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Nnt-203ENSMUST00000109204 3198 ntTSL 5 BASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Cast-211ENSMUST00000223206 5141 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Nynrin-201ENSMUST00000100529 6990 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Gm44152-201ENSMUST00000205007 1691 ntBASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Dtx3l-202ENSMUST00000114885 2648 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Tgm2-201ENSMUST00000103122 3596 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Fam120b-201ENSMUST00000055352 4518 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Trim55-201ENSMUST00000029139 2595 ntAPPRIS P1 TSL 2 BASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Wt1os-203ENSMUST00000172701 2960 ntTSL 2 BASIC11.45□□□□□ -0.58
Col28a1Q2UY11 A930038B10Rik-202ENSMUST00000181044 3415 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Gdap2-202ENSMUST00000106997 2014 ntTSL 2 BASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Kalrn-206ENSMUST00000114954 4677 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Gm36957-201ENSMUST00000192982 2824 ntBASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Entpd5-203ENSMUST00000110272 4972 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col28a1Q2UY11 Cyp11b1-201ENSMUST00000170259 3165 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Gm43289-201ENSMUST00000200537 1475 ntBASIC11.44□□□□□ -0.58
Col28a1Q2UY11 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Dcun1d2-201ENSMUST00000045366 2748 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Gm7642-201ENSMUST00000216345 1809 ntBASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Myo7a-213ENSMUST00000205746 6689 ntTSL 5 BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Taf9b-201ENSMUST00000055497 2633 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Gm44579-201ENSMUST00000142443 2064 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Lck-208ENSMUST00000167288 2074 ntTSL 5 BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Hnrnpa2b1-202ENSMUST00000090002 1662 ntAPPRIS P2 TSL 5 BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Anapc4-201ENSMUST00000031072 3854 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Kyat1-206ENSMUST00000113663 2026 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Gm12176-201ENSMUST00000121420 875 ntBASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Gm12715-201ENSMUST00000121430 1128 ntBASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Platr29-201ENSMUST00000130022 830 ntTSL 5 BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Gm44793-201ENSMUST00000136923 582 ntTSL 2 BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 4930515B02Rik-201ENSMUST00000140588 591 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Usp46os2-201ENSMUST00000152787 831 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Gm24548-201ENSMUST00000158650 108 ntBASIC11.44□□□□□ -0.58
Col28a1Q2UY11 1700088E04Rik-201ENSMUST00000169604 1249 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Gm8494-201ENSMUST00000178171 1233 ntBASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Mb-201ENSMUST00000019037 966 ntAPPRIS P1 TSL 2 BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Gm45022-201ENSMUST00000208332 545 ntTSL 5 BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Ctrb1-201ENSMUST00000034435 878 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Olfr686-201ENSMUST00000050157 1018 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 BC049730-201ENSMUST00000051714 1172 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Coq7-202ENSMUST00000098090 1215 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Gm20649-201ENSMUST00000160950 2740 ntTSL 2 BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Akap5-203ENSMUST00000172992 2711 ntAPPRIS ALT2 TSL 3 BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Fam189b-201ENSMUST00000041913 3083 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Eef1d-205ENSMUST00000109972 1624 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Rufy2-203ENSMUST00000122231 2664 ntTSL 5 BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Dhx58os-201ENSMUST00000137154 1594 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Ophn1-201ENSMUST00000033560 7170 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Styxl1-201ENSMUST00000053906 1582 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Topbp1-201ENSMUST00000035164 5224 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Fam172a-201ENSMUST00000091459 3892 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Cdc37-201ENSMUST00000019615 7851 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Hk2-201ENSMUST00000000642 5513 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Tmprss6-201ENSMUST00000017086 3191 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Gm37969-201ENSMUST00000195777 3409 ntBASIC11.44□□□□□ -0.58
Col28a1Q2UY11 4933406M09Rik-201ENSMUST00000162187 1768 ntAPPRIS P1 TSL 2 BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Plcd4-204ENSMUST00000113747 2720 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Rbm47-202ENSMUST00000094757 4643 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Inpp4a-206ENSMUST00000132615 3038 ntTSL 5 BASIC11.44□□□□□ -0.58
Col28a1Q2UY11 Plekha5-201ENSMUST00000087622 7382 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Vstm2a-202ENSMUST00000109647 1745 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Per1-202ENSMUST00000101004 3507 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Gm7964-201ENSMUST00000051522 1378 ntBASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Arhgef15-203ENSMUST00000108671 4372 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Plekha7-202ENSMUST00000181981 4633 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Pip5k1a-204ENSMUST00000107232 3437 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Agpat3-211ENSMUST00000166360 3439 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Nnt-201ENSMUST00000069902 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Ccl22-201ENSMUST00000034231 2216 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Tcp11l1-202ENSMUST00000111118 5474 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 4933440M02Rik-202ENSMUST00000205794 1601 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Ckmt1-201ENSMUST00000000317 1620 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Col28a1Q2UY11 Tmem19-206ENSMUST00000218731 1346 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 50.4 ms