Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Gm18711-201ENSMUST00000199341 750 ntBASIC13.05□□□□□ -0.32
Col6a1Q04857 Gm34908-201ENSMUST00000207222 569 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Col6a1Q04857 Gm7972-202ENSMUST00000208453 505 ntTSL 3 BASIC13.05□□□□□ -0.32
Col6a1Q04857 Gm35625-201ENSMUST00000210416 316 ntTSL 3 BASIC13.05□□□□□ -0.32
Col6a1Q04857 Gm9508-201ENSMUST00000220084 693 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
Col6a1Q04857 AC165154.1-201ENSMUST00000226661 340 ntBASIC13.05□□□□□ -0.32
Col6a1Q04857 Gm4604-201ENSMUST00000025040 390 ntBASIC13.05□□□□□ -0.32
Col6a1Q04857 1700013F07Rik-201ENSMUST00000029485 661 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col6a1Q04857 Mgp-201ENSMUST00000032342 617 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col6a1Q04857 Mcts2-201ENSMUST00000062148 917 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
Col6a1Q04857 Gm5805-201ENSMUST00000072779 456 ntBASIC13.05□□□□□ -0.32
Col6a1Q04857 Egr1-202ENSMUST00000165033 3036 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Col6a1Q04857 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Col6a1Q04857 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col6a1Q04857 Gm20687-203ENSMUST00000185121 4242 ntTSL 2 BASIC13.05□□□□□ -0.32
Col6a1Q04857 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col6a1Q04857 Dnajb6-203ENSMUST00000114839 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col6a1Q04857 Rab11fip5-201ENSMUST00000060837 4035 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col6a1Q04857 Grsf1-202ENSMUST00000113234 2286 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Col6a1Q04857 Gm26531-201ENSMUST00000181727 1967 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Col6a1Q04857 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC13.05□□□□□ -0.32
Col6a1Q04857 Capzb-201ENSMUST00000030518 1390 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Col6a1Q04857 C3-201ENSMUST00000024988 5136 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col6a1Q04857 Adam19-201ENSMUST00000011400 6383 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col6a1Q04857 Pdxdc1-201ENSMUST00000023361 4228 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col6a1Q04857 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col6a1Q04857 4930465M20Rik-201ENSMUST00000130564 1446 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Col6a1Q04857 Gm43154-214ENSMUST00000211225 1420 ntTSL 5 BASIC13.05□□□□□ -0.32
Col6a1Q04857 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col6a1Q04857 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col6a1Q04857 Chrdl1-202ENSMUST00000074660 4096 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col6a1Q04857 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col6a1Q04857 Ralgps2-207ENSMUST00000188656 2481 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Col6a1Q04857 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col6a1Q04857 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col6a1Q04857 P4ha1-203ENSMUST00000105466 2918 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col6a1Q04857 Slc39a9-208ENSMUST00000219706 5427 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Col6a1Q04857 A530016L24Rik-201ENSMUST00000057465 2636 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col6a1Q04857 Ripk4-202ENSMUST00000113743 3743 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Col6a1Q04857 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Col6a1Q04857 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC13.04□□□□□ -0.32
Col6a1Q04857 Gm12856-201ENSMUST00000119471 1293 ntBASIC13.04□□□□□ -0.32
Col6a1Q04857 Gm13822-201ENSMUST00000127563 346 ntTSL 3 BASIC13.04□□□□□ -0.32
Col6a1Q04857 4931406G06Rik-201ENSMUST00000147848 1252 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Col6a1Q04857 Gm20420-201ENSMUST00000173178 639 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Col6a1Q04857 Gm18367-201ENSMUST00000176139 600 ntBASIC13.04□□□□□ -0.32
Col6a1Q04857 Psmb6-201ENSMUST00000018430 798 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col6a1Q04857 Mir6407-201ENSMUST00000184510 101 ntBASIC13.04□□□□□ -0.32
Col6a1Q04857 Gm7596-202ENSMUST00000202171 737 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Col6a1Q04857 Gm10318-202ENSMUST00000217996 639 ntTSL 5 BASIC13.04□□□□□ -0.32
Col6a1Q04857 Actg1-201ENSMUST00000062147 876 ntTSL 3 BASIC13.04□□□□□ -0.32
Col6a1Q04857 Llph-201ENSMUST00000020444 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col6a1Q04857 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Col6a1Q04857 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col6a1Q04857 Harbi1-202ENSMUST00000111322 1316 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Col6a1Q04857 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col6a1Q04857 Fosb-205ENSMUST00000208326 3654 ntTSL 5 BASIC13.04□□□□□ -0.32
Col6a1Q04857 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Col6a1Q04857 Cpsf4l-202ENSMUST00000100248 1375 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Col6a1Q04857 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col6a1Q04857 Hspa14-201ENSMUST00000027961 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col6a1Q04857 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col6a1Q04857 Kdm1b-201ENSMUST00000037025 4987 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col6a1Q04857 Sema6d-206ENSMUST00000103239 6225 ntAPPRIS P4 TSL 5 BASIC13.04□□□□□ -0.32
Col6a1Q04857 Apol7e-201ENSMUST00000096358 2227 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col6a1Q04857 Fam3a-201ENSMUST00000015427 1427 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Col6a1Q04857 Gm29771-201ENSMUST00000193142 1423 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Col6a1Q04857 Gpr176-201ENSMUST00000039160 3899 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col6a1Q04857 1700001L05Rik-201ENSMUST00000100370 2270 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Col6a1Q04857 Slc6a4-201ENSMUST00000021195 2725 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col6a1Q04857 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col6a1Q04857 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col6a1Q04857 Asrgl1-201ENSMUST00000049948 4195 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col6a1Q04857 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col6a1Q04857 Kif13b-201ENSMUST00000100473 5603 ntAPPRIS P2 TSL 5 BASIC13.03□□□□□ -0.32
Col6a1Q04857 Nudt5-205ENSMUST00000179748 1590 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Col6a1Q04857 Phkg2-201ENSMUST00000033086 1570 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col6a1Q04857 BC030867-201ENSMUST00000100392 2547 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col6a1Q04857 Zfp61-208ENSMUST00000165241 1668 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Col6a1Q04857 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Col6a1Q04857 Satb2-202ENSMUST00000114415 5805 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col6a1Q04857 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Col6a1Q04857 Gm11979-201ENSMUST00000119629 743 ntBASIC13.03□□□□□ -0.32
Col6a1Q04857 Gm12164-201ENSMUST00000121695 551 ntBASIC13.03□□□□□ -0.32
Col6a1Q04857 Gm24844-201ENSMUST00000158679 127 ntBASIC13.03□□□□□ -0.32
Col6a1Q04857 Rps19-ps9-201ENSMUST00000161787 414 ntBASIC13.03□□□□□ -0.32
Col6a1Q04857 Trub2-210ENSMUST00000177467 744 ntTSL 3 BASIC13.03□□□□□ -0.32
Col6a1Q04857 Gm26134-201ENSMUST00000178484 110 ntBASIC13.03□□□□□ -0.32
Col6a1Q04857 A930005H10Rik-204ENSMUST00000185681 625 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Col6a1Q04857 A930005H10Rik-206ENSMUST00000188260 739 ntTSL 2 BASIC13.03□□□□□ -0.32
Col6a1Q04857 Gm44506-201ENSMUST00000206278 965 ntBASIC13.03□□□□□ -0.32
Col6a1Q04857 Fcer2a-206ENSMUST00000208438 930 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col6a1Q04857 Fcer2a-208ENSMUST00000208603 930 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col6a1Q04857 Gm4924-205ENSMUST00000211099 490 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Col6a1Q04857 AC159890.1-201ENSMUST00000215382 684 ntTSL 5 BASIC13.03□□□□□ -0.32
Col6a1Q04857 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC13.03□□□□□ -0.32
Col6a1Q04857 Gm10775-201ENSMUST00000099425 1203 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col6a1Q04857 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col6a1Q04857 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Col6a1Q04857 Rtbdn-202ENSMUST00000109740 1363 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 78.4 ms