Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Lig3P97386 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Lig3P97386 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Lig3P97386 Jak3-202ENSMUST00000110012 3774 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Lig3P97386 Fbxl22-201ENSMUST00000056890 3935 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lig3P97386 Slc38a8-201ENSMUST00000036748 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lig3P97386 Gm26531-201ENSMUST00000181727 1967 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Lig3P97386 Slc35f6-205ENSMUST00000196740 1972 ntTSL 5 BASIC12.94□□□□□ -0.34
Lig3P97386 Bmp5-201ENSMUST00000012281 3822 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lig3P97386 Usp14-201ENSMUST00000092096 2360 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lig3P97386 Spata2-201ENSMUST00000057627 4012 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lig3P97386 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lig3P97386 Tsku-201ENSMUST00000094161 2760 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lig3P97386 Calcoco1-204ENSMUST00000171838 2968 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Lig3P97386 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC12.94□□□□□ -0.34
Lig3P97386 Trp63-204ENSMUST00000115305 1729 ntAPPRIS ALT1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lig3P97386 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lig3P97386 Pde3a-201ENSMUST00000043259 12302 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lig3P97386 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lig3P97386 Srsf5-202ENSMUST00000110351 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lig3P97386 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC12.94□□□□□ -0.34
Lig3P97386 Ankrd29-202ENSMUST00000122408 850 ntTSL 5 BASIC12.94□□□□□ -0.34
Lig3P97386 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC12.94□□□□□ -0.34
Lig3P97386 Gm15852-201ENSMUST00000159701 915 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Lig3P97386 Gm5616-201ENSMUST00000165252 384 ntBASIC12.94□□□□□ -0.34
Lig3P97386 Gm8741-201ENSMUST00000174736 384 ntBASIC12.94□□□□□ -0.34
Lig3P97386 Gm6652-201ENSMUST00000186414 1070 ntBASIC12.94□□□□□ -0.34
Lig3P97386 Ccdc12-201ENSMUST00000019803 834 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lig3P97386 Gm44124-201ENSMUST00000204159 472 ntBASIC12.94□□□□□ -0.34
Lig3P97386 Gm35822-201ENSMUST00000204954 562 ntTSL 3 BASIC12.94□□□□□ -0.34
Lig3P97386 Gm35060-201ENSMUST00000207669 825 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
Lig3P97386 C330004P14Rik-201ENSMUST00000218833 628 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Lig3P97386 Gm40652-201ENSMUST00000218944 895 ntTSL 5 BASIC12.94□□□□□ -0.34
Lig3P97386 Gm1821-202ENSMUST00000227415 750 ntBASIC12.94□□□□□ -0.34
Lig3P97386 Snf8-201ENSMUST00000006217 1004 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lig3P97386 Ppm1l-201ENSMUST00000029355 9417 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lig3P97386 AC122291.1-201ENSMUST00000228937 5748 ntBASIC12.94□□□□□ -0.34
Lig3P97386 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lig3P97386 Dlgap1-210ENSMUST00000146730 3936 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Lig3P97386 Oplah-209ENSMUST00000171340 4085 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
Lig3P97386 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC12.94□□□□□ -0.34
Lig3P97386 Nop14-201ENSMUST00000041364 2702 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lig3P97386 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lig3P97386 Col8a1-201ENSMUST00000089332 5108 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lig3P97386 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lig3P97386 Gm2420-201ENSMUST00000119864 2149 ntBASIC12.94□□□□□ -0.34
Lig3P97386 Smc3-201ENSMUST00000025930 4851 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lig3P97386 Fndc3b-201ENSMUST00000046157 6875 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lig3P97386 Gng7-203ENSMUST00000117805 3382 ntAPPRIS ALT1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Lig3P97386 Gm26905-201ENSMUST00000180798 6621 ntTSL 5 BASIC12.93□□□□□ -0.34
Lig3P97386 Gjb2-201ENSMUST00000055698 2406 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lig3P97386 Rad51b-202ENSMUST00000171210 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lig3P97386 Kifc2-201ENSMUST00000004294 3143 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lig3P97386 Ap1g2-211ENSMUST00000170285 2596 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Lig3P97386 Akt2-201ENSMUST00000051356 2923 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lig3P97386 Olfr520-202ENSMUST00000220185 1330 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Lig3P97386 Fgf12-201ENSMUST00000100024 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lig3P97386 Phyhipl-201ENSMUST00000046513 2877 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lig3P97386 Elmod3-204ENSMUST00000141833 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lig3P97386 Myo18a-205ENSMUST00000100794 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lig3P97386 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lig3P97386 Coro6-204ENSMUST00000102493 2804 ntAPPRIS ALT1 TSL 5 BASIC12.93□□□□□ -0.34
Lig3P97386 Ighv5-2-201ENSMUST00000103442 350 ntAPPRIS ALT2 BASIC12.93□□□□□ -0.34
Lig3P97386 Smpd4-223ENSMUST00000172182 516 ntTSL 3 BASIC12.93□□□□□ -0.34
Lig3P97386 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Lig3P97386 Gm28192-201ENSMUST00000189381 778 ntTSL 5 BASIC12.93□□□□□ -0.34
Lig3P97386 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC12.93□□□□□ -0.34
Lig3P97386 Gm36987-201ENSMUST00000194704 2979 ntBASIC12.93□□□□□ -0.34
Lig3P97386 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC12.93□□□□□ -0.34
Lig3P97386 Ptbp2-210ENSMUST00000198403 389 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Lig3P97386 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC12.93□□□□□ -0.34
Lig3P97386 Gm21027-201ENSMUST00000219300 1236 ntBASIC12.93□□□□□ -0.34
Lig3P97386 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC12.93□□□□□ -0.34
Lig3P97386 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC12.93□□□□□ -0.34
Lig3P97386 CT009713.8-202ENSMUST00000224732 385 ntBASIC12.93□□□□□ -0.34
Lig3P97386 AC169036.1-201ENSMUST00000227994 296 ntBASIC12.93□□□□□ -0.34
Lig3P97386 Nop10-201ENSMUST00000028553 1109 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lig3P97386 Calca-201ENSMUST00000032906 994 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lig3P97386 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lig3P97386 4930523C07Rik-202ENSMUST00000097513 300 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
Lig3P97386 Iqcc-201ENSMUST00000046675 2639 ntAPPRIS P2 TSL 2 BASIC12.93□□□□□ -0.34
Lig3P97386 Ints6l-207ENSMUST00000186445 3608 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
Lig3P97386 Rragd-202ENSMUST00000084747 4295 ntTSL 5 BASIC12.93□□□□□ -0.34
Lig3P97386 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Lig3P97386 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lig3P97386 Tnfaip3-201ENSMUST00000019997 4422 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lig3P97386 Rbms1-201ENSMUST00000028347 4436 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Lig3P97386 Dnmbp-201ENSMUST00000026209 4882 ntAPPRIS P2 TSL 2 BASIC12.93□□□□□ -0.34
Lig3P97386 4931406C07Rik-203ENSMUST00000180339 2756 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lig3P97386 Tcf4-240ENSMUST00000201781 2779 ntTSL 5 BASIC12.92□□□□□ -0.34
Lig3P97386 Tnc-202ENSMUST00000107371 2928 ntTSL 5 BASIC12.92□□□□□ -0.34
Lig3P97386 Gnas-209ENSMUST00000109088 3519 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Lig3P97386 Tmcc2-203ENSMUST00000132435 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lig3P97386 Gnas-201ENSMUST00000080493 3519 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Lig3P97386 Mfsd4a-204ENSMUST00000126927 2422 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Lig3P97386 Susd3-201ENSMUST00000021816 1317 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Lig3P97386 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC12.92□□□□□ -0.34
Lig3P97386 Spert-204ENSMUST00000169658 1474 ntAPPRIS ALT2 TSL 3 BASIC12.92□□□□□ -0.34
Lig3P97386 Gm37165-201ENSMUST00000193815 1463 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Lig3P97386 Srp54b-202ENSMUST00000218879 3642 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 69.7 ms