Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Opcml-201ENSMUST00000073822 2378 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.66
Cd40lgP27548 Susd5-201ENSMUST00000135338 4083 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Cd40lgP27548 Capn3-205ENSMUST00000110719 2778 ntTSL 5 BASIC10.94□□□□□ -0.66
Cd40lgP27548 Gm17767-201ENSMUST00000189410 1470 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Cd40lgP27548 Myh13-203ENSMUST00000180845 5991 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
Cd40lgP27548 Calcoco1-204ENSMUST00000171838 2968 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Cd40lgP27548 Oplah-209ENSMUST00000171340 4085 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
Cd40lgP27548 Madd-204ENSMUST00000077941 5990 ntAPPRIS ALT2 TSL 2 BASIC10.93□□□□□ -0.66
Cd40lgP27548 Madd-205ENSMUST00000099723 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cd40lgP27548 Nlrp6-203ENSMUST00000183845 4436 ntAPPRIS P2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cd40lgP27548 Drd1-202ENSMUST00000221470 3576 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cd40lgP27548 Zbtb21-201ENSMUST00000052089 5410 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Cd40lgP27548 Gabra1-201ENSMUST00000020707 4688 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cd40lgP27548 Zfp61-208ENSMUST00000165241 1668 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
Cd40lgP27548 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Cd40lgP27548 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cd40lgP27548 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Cd40lgP27548 Gm13996-201ENSMUST00000118456 430 ntBASIC10.93□□□□□ -0.66
Cd40lgP27548 4933406I18Rik-201ENSMUST00000124673 905 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Cd40lgP27548 9430021M05Rik-201ENSMUST00000145985 1201 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Cd40lgP27548 Gm13966-201ENSMUST00000148420 832 ntTSL 3 BASIC10.93□□□□□ -0.66
Cd40lgP27548 Gm7568-202ENSMUST00000160446 709 ntTSL 3 BASIC10.93□□□□□ -0.66
Cd40lgP27548 Ccdc188-201ENSMUST00000167061 747 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
Cd40lgP27548 Ldlrad2-201ENSMUST00000178923 429 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
Cd40lgP27548 Ighv4-2-201ENSMUST00000192975 362 ntBASIC10.93□□□□□ -0.66
Cd40lgP27548 Vdac1-201ENSMUST00000020673 891 ntTSL 5 BASIC10.93□□□□□ -0.66
Cd40lgP27548 Gm44710-201ENSMUST00000208885 471 ntTSL 2 BASIC10.93□□□□□ -0.66
Cd40lgP27548 Ggps1-204ENSMUST00000221713 667 ntTSL 3 BASIC10.93□□□□□ -0.66
Cd40lgP27548 Defb22-201ENSMUST00000028966 628 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cd40lgP27548 Dnajc17-201ENSMUST00000038439 1008 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cd40lgP27548 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Cd40lgP27548 Fgf12-201ENSMUST00000100024 3065 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cd40lgP27548 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
Cd40lgP27548 Zscan12-203ENSMUST00000225545 4405 ntAPPRIS P1 BASIC10.93□□□□□ -0.66
Cd40lgP27548 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cd40lgP27548 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cd40lgP27548 AC160405.1-201ENSMUST00000218207 1545 ntBASIC10.93□□□□□ -0.66
Cd40lgP27548 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cd40lgP27548 Col20a1-201ENSMUST00000108856 4489 ntAPPRIS ALT2 TSL 5 BASIC10.93□□□□□ -0.66
Cd40lgP27548 Mon1b-202ENSMUST00000179926 3470 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cd40lgP27548 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC10.93□□□□□ -0.66
Cd40lgP27548 Zdhhc3-208ENSMUST00000147563 6987 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cd40lgP27548 Myt1l-201ENSMUST00000021009 5027 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cd40lgP27548 Lrrn4-201ENSMUST00000049787 3715 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cd40lgP27548 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Cd40lgP27548 Spata2-201ENSMUST00000057627 4012 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cd40lgP27548 Gm18983-201ENSMUST00000222884 2729 ntBASIC10.93□□□□□ -0.66
Cd40lgP27548 Adcyap1r1-201ENSMUST00000070736 3695 ntAPPRIS P4 TSL 1 (best) BASIC10.93□□□□□ -0.66
Cd40lgP27548 4930488B22Rik-201ENSMUST00000172500 1722 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Cd40lgP27548 Morc3-206ENSMUST00000202261 4175 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cd40lgP27548 Morc3-201ENSMUST00000044068 4178 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
Cd40lgP27548 AC160410.1-201ENSMUST00000219298 1972 ntBASIC10.92□□□□□ -0.66
Cd40lgP27548 Anp32e-204ENSMUST00000168106 2890 ntTSL 5 BASIC10.92□□□□□ -0.66
Cd40lgP27548 Cdh22-201ENSMUST00000065438 3702 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cd40lgP27548 Bcar1-203ENSMUST00000212349 3116 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cd40lgP27548 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cd40lgP27548 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cd40lgP27548 Serpinb12-202ENSMUST00000112724 1623 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cd40lgP27548 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cd40lgP27548 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC10.92□□□□□ -0.66
Cd40lgP27548 Mrpl45-201ENSMUST00000019026 2431 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cd40lgP27548 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cd40lgP27548 5330417C22Rik-202ENSMUST00000106625 5836 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
Cd40lgP27548 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cd40lgP27548 Lcn6-203ENSMUST00000114199 729 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cd40lgP27548 Zscan10-203ENSMUST00000117606 891 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Cd40lgP27548 Rprl1-201ENSMUST00000158050 327 ntBASIC10.92□□□□□ -0.66
Cd40lgP27548 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cd40lgP27548 Gm28071-201ENSMUST00000190355 478 ntBASIC10.92□□□□□ -0.66
Cd40lgP27548 Gm44711-201ENSMUST00000205414 1264 ntBASIC10.92□□□□□ -0.66
Cd40lgP27548 Phgdh-ps1-201ENSMUST00000207540 754 ntBASIC10.92□□□□□ -0.66
Cd40lgP27548 Gm26953-204ENSMUST00000212526 553 ntTSL 5 BASIC10.92□□□□□ -0.66
Cd40lgP27548 AC098716.1-201ENSMUST00000213527 703 ntBASIC10.92□□□□□ -0.66
Cd40lgP27548 Gm7293-201ENSMUST00000216682 1007 ntBASIC10.92□□□□□ -0.66
Cd40lgP27548 Agrp-201ENSMUST00000005849 661 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cd40lgP27548 Olfr117-201ENSMUST00000073636 954 ntAPPRIS P1 BASIC10.92□□□□□ -0.66
Cd40lgP27548 Olfr130-201ENSMUST00000087129 954 ntAPPRIS P1 BASIC10.92□□□□□ -0.66
Cd40lgP27548 Gjd4-201ENSMUST00000041007 2661 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cd40lgP27548 Cdc37l1-201ENSMUST00000050148 5179 ntAPPRIS P2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cd40lgP27548 Fcgbp-203ENSMUST00000138392 7926 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
Cd40lgP27548 Fcgbp-201ENSMUST00000076648 7928 ntAPPRIS P2 TSL 5 BASIC10.92□□□□□ -0.66
Cd40lgP27548 Bicral-201ENSMUST00000040624 6579 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cd40lgP27548 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Cd40lgP27548 Spice1-201ENSMUST00000050897 4627 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cd40lgP27548 Rab14-202ENSMUST00000113025 4346 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Cd40lgP27548 B930036N10Rik-202ENSMUST00000181170 3544 ntBASIC10.92□□□□□ -0.66
Cd40lgP27548 H2-T10-202ENSMUST00000174382 1699 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Cd40lgP27548 Rgma-202ENSMUST00000119206 3481 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Cd40lgP27548 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cd40lgP27548 Fyn-206ENSMUST00000136659 1910 ntTSL 5 BASIC10.92□□□□□ -0.66
Cd40lgP27548 Gucy1a3-204ENSMUST00000193924 4710 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cd40lgP27548 Mfsd4a-204ENSMUST00000126927 2422 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Cd40lgP27548 Sstr3-201ENSMUST00000053239 3928 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cd40lgP27548 Fnbp1l-201ENSMUST00000162409 5198 ntTSL 5 BASIC10.91□□□□□ -0.66
Cd40lgP27548 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cd40lgP27548 Tcf7l2-207ENSMUST00000111653 2629 ntAPPRIS ALT2 TSL 2 BASIC10.91□□□□□ -0.66
Cd40lgP27548 Irx3os-203ENSMUST00000133528 1354 ntTSL 5 BASIC10.91□□□□□ -0.66
Cd40lgP27548 Tmem129-201ENSMUST00000019439 2828 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cd40lgP27548 Gm44260-201ENSMUST00000204946 2094 ntBASIC10.91□□□□□ -0.66
Cd40lgP27548 Tspan32-201ENSMUST00000009396 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Retrieved 100 of 76,532 protein–RNA pairs in 72.8 ms