Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim3Q9R1R2 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim3Q9R1R2 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC19.23■□□□□ 0.67
Trim3Q9R1R2 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim3Q9R1R2 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Trim3Q9R1R2 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Trim3Q9R1R2 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Trim3Q9R1R2 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim3Q9R1R2 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC19.22■□□□□ 0.67
Trim3Q9R1R2 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC19.22■□□□□ 0.67
Trim3Q9R1R2 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC19.22■□□□□ 0.67
Trim3Q9R1R2 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim3Q9R1R2 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Trim3Q9R1R2 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim3Q9R1R2 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim3Q9R1R2 Gm43403-201ENSMUST00000198011 1786 ntBASIC19.21■□□□□ 0.67
Trim3Q9R1R2 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim3Q9R1R2 Gm10616-201ENSMUST00000205285 2127 ntBASIC19.21■□□□□ 0.67
Trim3Q9R1R2 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim3Q9R1R2 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim3Q9R1R2 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim3Q9R1R2 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim3Q9R1R2 Gm15043-201ENSMUST00000118843 1543 ntBASIC19.2■□□□□ 0.66
Trim3Q9R1R2 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim3Q9R1R2 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC19.2■□□□□ 0.66
Trim3Q9R1R2 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim3Q9R1R2 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim3Q9R1R2 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim3Q9R1R2 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim3Q9R1R2 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Trim3Q9R1R2 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC19.2■□□□□ 0.66
Trim3Q9R1R2 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim3Q9R1R2 Etf1-202ENSMUST00000180351 108 ntBASIC19.2■□□□□ 0.66
Trim3Q9R1R2 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC19.2■□□□□ 0.66
Trim3Q9R1R2 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim3Q9R1R2 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim3Q9R1R2 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim3Q9R1R2 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim3Q9R1R2 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim3Q9R1R2 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim3Q9R1R2 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Trim3Q9R1R2 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Trim3Q9R1R2 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Trim3Q9R1R2 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim3Q9R1R2 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim3Q9R1R2 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim3Q9R1R2 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim3Q9R1R2 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim3Q9R1R2 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim3Q9R1R2 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
Trim3Q9R1R2 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Trim3Q9R1R2 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim3Q9R1R2 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC19.18■□□□□ 0.66
Trim3Q9R1R2 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC19.18■□□□□ 0.66
Trim3Q9R1R2 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim3Q9R1R2 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC19.18■□□□□ 0.66
Trim3Q9R1R2 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim3Q9R1R2 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim3Q9R1R2 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim3Q9R1R2 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Trim3Q9R1R2 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Trim3Q9R1R2 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim3Q9R1R2 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
Trim3Q9R1R2 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim3Q9R1R2 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC19.17■□□□□ 0.66
Trim3Q9R1R2 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim3Q9R1R2 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim3Q9R1R2 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim3Q9R1R2 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim3Q9R1R2 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim3Q9R1R2 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim3Q9R1R2 AC164883.3-201ENSMUST00000227396 1774 ntBASIC19.16■□□□□ 0.66
Trim3Q9R1R2 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Trim3Q9R1R2 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim3Q9R1R2 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC19.16■□□□□ 0.66
Trim3Q9R1R2 Gm10399-202ENSMUST00000202768 748 ntBASIC19.16■□□□□ 0.66
Trim3Q9R1R2 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim3Q9R1R2 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim3Q9R1R2 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim3Q9R1R2 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Trim3Q9R1R2 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim3Q9R1R2 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC19.15■□□□□ 0.66
Trim3Q9R1R2 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim3Q9R1R2 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim3Q9R1R2 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim3Q9R1R2 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim3Q9R1R2 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim3Q9R1R2 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Trim3Q9R1R2 Kdm3b-204ENSMUST00000224715 2032 ntBASIC19.14■□□□□ 0.65
Trim3Q9R1R2 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC19.14■□□□□ 0.65
Trim3Q9R1R2 Gm40881-201ENSMUST00000223397 166 ntBASIC19.14■□□□□ 0.65
Trim3Q9R1R2 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Trim3Q9R1R2 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim3Q9R1R2 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Trim3Q9R1R2 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim3Q9R1R2 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Trim3Q9R1R2 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Trim3Q9R1R2 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim3Q9R1R2 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Trim3Q9R1R2 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 16.9 ms