Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Prpf40aQ9R1C7 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Prpf40aQ9R1C7 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
Prpf40aQ9R1C7 Gm5131-201ENSMUST00000212776 1238 ntBASIC22.55■■□□□ 1.2
Prpf40aQ9R1C7 Gm40881-201ENSMUST00000223397 166 ntBASIC22.55■■□□□ 1.2
Prpf40aQ9R1C7 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
Prpf40aQ9R1C7 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Prpf40aQ9R1C7 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Prpf40aQ9R1C7 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Prpf40aQ9R1C7 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Prpf40aQ9R1C7 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Prpf40aQ9R1C7 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Prpf40aQ9R1C7 Gm10620-201ENSMUST00000098379 1332 ntBASIC22.54■■□□□ 1.2
Prpf40aQ9R1C7 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Prpf40aQ9R1C7 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
Prpf40aQ9R1C7 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Prpf40aQ9R1C7 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Prpf40aQ9R1C7 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Prpf40aQ9R1C7 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC22.53■■□□□ 1.2
Prpf40aQ9R1C7 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC22.53■■□□□ 1.2
Prpf40aQ9R1C7 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Prpf40aQ9R1C7 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
Prpf40aQ9R1C7 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
Prpf40aQ9R1C7 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC22.52■■□□□ 1.2
Prpf40aQ9R1C7 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC22.52■■□□□ 1.2
Prpf40aQ9R1C7 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Prpf40aQ9R1C7 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Prpf40aQ9R1C7 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.19
Prpf40aQ9R1C7 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Prpf40aQ9R1C7 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Prpf40aQ9R1C7 AC093043.1-201ENSMUST00000226700 898 ntBASIC22.51■■□□□ 1.19
Prpf40aQ9R1C7 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Prpf40aQ9R1C7 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Prpf40aQ9R1C7 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC22.51■■□□□ 1.19
Prpf40aQ9R1C7 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Prpf40aQ9R1C7 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Prpf40aQ9R1C7 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Prpf40aQ9R1C7 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Prpf40aQ9R1C7 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
Prpf40aQ9R1C7 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Prpf40aQ9R1C7 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
Prpf40aQ9R1C7 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Prpf40aQ9R1C7 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Prpf40aQ9R1C7 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Prpf40aQ9R1C7 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Prpf40aQ9R1C7 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC22.48■■□□□ 1.19
Prpf40aQ9R1C7 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Prpf40aQ9R1C7 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Prpf40aQ9R1C7 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC22.48■■□□□ 1.19
Prpf40aQ9R1C7 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Prpf40aQ9R1C7 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Prpf40aQ9R1C7 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Prpf40aQ9R1C7 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC22.47■■□□□ 1.19
Prpf40aQ9R1C7 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC22.47■■□□□ 1.19
Prpf40aQ9R1C7 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Prpf40aQ9R1C7 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
Prpf40aQ9R1C7 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC22.47■■□□□ 1.19
Prpf40aQ9R1C7 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC22.47■■□□□ 1.19
Prpf40aQ9R1C7 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
Prpf40aQ9R1C7 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Prpf40aQ9R1C7 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Prpf40aQ9R1C7 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Prpf40aQ9R1C7 Etf1-202ENSMUST00000180351 108 ntBASIC22.46■■□□□ 1.19
Prpf40aQ9R1C7 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC22.46■■□□□ 1.19
Prpf40aQ9R1C7 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC22.46■■□□□ 1.19
Prpf40aQ9R1C7 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC22.46■■□□□ 1.19
Prpf40aQ9R1C7 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
Prpf40aQ9R1C7 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
Prpf40aQ9R1C7 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
Prpf40aQ9R1C7 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC22.45■■□□□ 1.18
Prpf40aQ9R1C7 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC22.45■■□□□ 1.18
Prpf40aQ9R1C7 Rps24-207ENSMUST00000224568 714 ntBASIC22.45■■□□□ 1.18
Prpf40aQ9R1C7 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
Prpf40aQ9R1C7 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Prpf40aQ9R1C7 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Prpf40aQ9R1C7 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Prpf40aQ9R1C7 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC22.44■■□□□ 1.18
Prpf40aQ9R1C7 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
Prpf40aQ9R1C7 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC22.44■■□□□ 1.18
Prpf40aQ9R1C7 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
Prpf40aQ9R1C7 Hsf1-207ENSMUST00000228371 2102 ntBASIC22.44■■□□□ 1.18
Prpf40aQ9R1C7 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Prpf40aQ9R1C7 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Prpf40aQ9R1C7 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Prpf40aQ9R1C7 Gm9959-201ENSMUST00000068277 390 ntBASIC22.44■■□□□ 1.18
Prpf40aQ9R1C7 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
Prpf40aQ9R1C7 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC22.44■■□□□ 1.18
Prpf40aQ9R1C7 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
Prpf40aQ9R1C7 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Prpf40aQ9R1C7 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC22.43■■□□□ 1.18
Prpf40aQ9R1C7 Gm7417-201ENSMUST00000192950 473 ntBASIC22.43■■□□□ 1.18
Prpf40aQ9R1C7 Gm45102-201ENSMUST00000207427 857 ntBASIC22.43■■□□□ 1.18
Prpf40aQ9R1C7 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
Prpf40aQ9R1C7 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
Prpf40aQ9R1C7 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC22.43■■□□□ 1.18
Prpf40aQ9R1C7 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC22.42■■□□□ 1.18
Prpf40aQ9R1C7 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Prpf40aQ9R1C7 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Prpf40aQ9R1C7 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Prpf40aQ9R1C7 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC22.41■■□□□ 1.18
Retrieved 100 of 76,532 protein–RNA pairs in 10.7 ms