Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Lima1Q9ERG0 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Lima1Q9ERG0 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC20.23■□□□□ 0.83
Lima1Q9ERG0 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Lima1Q9ERG0 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Lima1Q9ERG0 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Lima1Q9ERG0 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Lima1Q9ERG0 Gm5067-201ENSMUST00000170449 1009 ntBASIC20.22■□□□□ 0.83
Lima1Q9ERG0 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC20.22■□□□□ 0.83
Lima1Q9ERG0 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Lima1Q9ERG0 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC20.22■□□□□ 0.83
Lima1Q9ERG0 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Lima1Q9ERG0 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Lima1Q9ERG0 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Lima1Q9ERG0 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Lima1Q9ERG0 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Lima1Q9ERG0 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Lima1Q9ERG0 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Lima1Q9ERG0 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Lima1Q9ERG0 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Lima1Q9ERG0 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Lima1Q9ERG0 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Lima1Q9ERG0 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Lima1Q9ERG0 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Lima1Q9ERG0 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Lima1Q9ERG0 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Lima1Q9ERG0 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Lima1Q9ERG0 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Lima1Q9ERG0 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Lima1Q9ERG0 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
Lima1Q9ERG0 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC20.21■□□□□ 0.83
Lima1Q9ERG0 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Lima1Q9ERG0 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Lima1Q9ERG0 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Lima1Q9ERG0 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Lima1Q9ERG0 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC20.2■□□□□ 0.82
Lima1Q9ERG0 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Lima1Q9ERG0 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Lima1Q9ERG0 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Lima1Q9ERG0 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Lima1Q9ERG0 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Lima1Q9ERG0 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Lima1Q9ERG0 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC20.2■□□□□ 0.82
Lima1Q9ERG0 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Lima1Q9ERG0 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Lima1Q9ERG0 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Lima1Q9ERG0 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Lima1Q9ERG0 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Lima1Q9ERG0 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Lima1Q9ERG0 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Lima1Q9ERG0 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Lima1Q9ERG0 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Lima1Q9ERG0 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Lima1Q9ERG0 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Lima1Q9ERG0 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Lima1Q9ERG0 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Lima1Q9ERG0 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Lima1Q9ERG0 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Lima1Q9ERG0 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC20.18■□□□□ 0.82
Lima1Q9ERG0 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Lima1Q9ERG0 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Lima1Q9ERG0 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Lima1Q9ERG0 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC20.18■□□□□ 0.82
Lima1Q9ERG0 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC20.18■□□□□ 0.82
Lima1Q9ERG0 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Lima1Q9ERG0 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Lima1Q9ERG0 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Lima1Q9ERG0 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Lima1Q9ERG0 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Lima1Q9ERG0 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Lima1Q9ERG0 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Lima1Q9ERG0 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Lima1Q9ERG0 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Lima1Q9ERG0 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Lima1Q9ERG0 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Lima1Q9ERG0 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC20.16■□□□□ 0.82
Lima1Q9ERG0 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC20.16■□□□□ 0.82
Lima1Q9ERG0 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Lima1Q9ERG0 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Lima1Q9ERG0 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Lima1Q9ERG0 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Lima1Q9ERG0 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Lima1Q9ERG0 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
Lima1Q9ERG0 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Lima1Q9ERG0 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Lima1Q9ERG0 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Lima1Q9ERG0 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
Lima1Q9ERG0 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Lima1Q9ERG0 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
Lima1Q9ERG0 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
Lima1Q9ERG0 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Lima1Q9ERG0 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Lima1Q9ERG0 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Lima1Q9ERG0 Gm5913-201ENSMUST00000119397 1399 ntBASIC20.14■□□□□ 0.81
Lima1Q9ERG0 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Lima1Q9ERG0 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
Lima1Q9ERG0 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Lima1Q9ERG0 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Lima1Q9ERG0 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Lima1Q9ERG0 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC20.13■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 13.3 ms