Protein–RNA interactions for Protein: Q9EQH3

Vps35, Vacuolar protein sorting-associated protein 35, mousemouse

Known RBP Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps35Q9EQH3 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Vps35Q9EQH3 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Vps35Q9EQH3 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Vps35Q9EQH3 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Vps35Q9EQH3 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Vps35Q9EQH3 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Vps35Q9EQH3 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC20.51■□□□□ 0.87
Vps35Q9EQH3 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Vps35Q9EQH3 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Vps35Q9EQH3 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Vps35Q9EQH3 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Vps35Q9EQH3 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Vps35Q9EQH3 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Vps35Q9EQH3 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Vps35Q9EQH3 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Vps35Q9EQH3 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Vps35Q9EQH3 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Vps35Q9EQH3 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Vps35Q9EQH3 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Vps35Q9EQH3 Gm43403-201ENSMUST00000198011 1786 ntBASIC20.5■□□□□ 0.87
Vps35Q9EQH3 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC20.5■□□□□ 0.87
Vps35Q9EQH3 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Vps35Q9EQH3 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Vps35Q9EQH3 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Vps35Q9EQH3 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Vps35Q9EQH3 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Vps35Q9EQH3 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Vps35Q9EQH3 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Vps35Q9EQH3 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Vps35Q9EQH3 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC20.49■□□□□ 0.87
Vps35Q9EQH3 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
Vps35Q9EQH3 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC20.49■□□□□ 0.87
Vps35Q9EQH3 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Vps35Q9EQH3 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Vps35Q9EQH3 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Vps35Q9EQH3 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Vps35Q9EQH3 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Vps35Q9EQH3 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Vps35Q9EQH3 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
Vps35Q9EQH3 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Vps35Q9EQH3 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC20.48■□□□□ 0.87
Vps35Q9EQH3 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Vps35Q9EQH3 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Vps35Q9EQH3 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC20.47■□□□□ 0.87
Vps35Q9EQH3 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Vps35Q9EQH3 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Vps35Q9EQH3 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Vps35Q9EQH3 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Vps35Q9EQH3 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Vps35Q9EQH3 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Vps35Q9EQH3 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Vps35Q9EQH3 Gm43006-201ENSMUST00000197702 1602 ntBASIC20.46■□□□□ 0.87
Vps35Q9EQH3 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Vps35Q9EQH3 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Vps35Q9EQH3 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Vps35Q9EQH3 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Vps35Q9EQH3 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Vps35Q9EQH3 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Vps35Q9EQH3 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC20.45■□□□□ 0.87
Vps35Q9EQH3 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Vps35Q9EQH3 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Vps35Q9EQH3 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Vps35Q9EQH3 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Vps35Q9EQH3 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC20.45■□□□□ 0.86
Vps35Q9EQH3 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Vps35Q9EQH3 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC20.45■□□□□ 0.86
Vps35Q9EQH3 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Vps35Q9EQH3 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Vps35Q9EQH3 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Vps35Q9EQH3 Gm22238-201ENSMUST00000175222 88 ntBASIC20.44■□□□□ 0.86
Vps35Q9EQH3 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Vps35Q9EQH3 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Vps35Q9EQH3 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Vps35Q9EQH3 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Vps35Q9EQH3 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Vps35Q9EQH3 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC20.42■□□□□ 0.86
Vps35Q9EQH3 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Vps35Q9EQH3 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Vps35Q9EQH3 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC20.42■□□□□ 0.86
Vps35Q9EQH3 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Vps35Q9EQH3 Kdm3b-204ENSMUST00000224715 2032 ntBASIC20.42■□□□□ 0.86
Vps35Q9EQH3 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Vps35Q9EQH3 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Vps35Q9EQH3 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Vps35Q9EQH3 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
Vps35Q9EQH3 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
Vps35Q9EQH3 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC20.41■□□□□ 0.86
Vps35Q9EQH3 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Vps35Q9EQH3 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Vps35Q9EQH3 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Vps35Q9EQH3 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC20.41■□□□□ 0.86
Vps35Q9EQH3 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Vps35Q9EQH3 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
Vps35Q9EQH3 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Vps35Q9EQH3 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Vps35Q9EQH3 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Vps35Q9EQH3 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Vps35Q9EQH3 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
Vps35Q9EQH3 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Vps35Q9EQH3 Gm4430-201ENSMUST00000192413 1943 ntBASIC20.39■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 79.7 ms