Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC21.27■□□□□ 0.99
Ccdc40Q8BI79 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Ccdc40Q8BI79 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC21.27■□□□□ 0.99
Ccdc40Q8BI79 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ccdc40Q8BI79 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ccdc40Q8BI79 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ccdc40Q8BI79 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
Ccdc40Q8BI79 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ccdc40Q8BI79 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ccdc40Q8BI79 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ccdc40Q8BI79 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ccdc40Q8BI79 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ccdc40Q8BI79 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ccdc40Q8BI79 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ccdc40Q8BI79 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC21.25■□□□□ 0.99
Ccdc40Q8BI79 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC21.25■□□□□ 0.99
Ccdc40Q8BI79 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ccdc40Q8BI79 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
Ccdc40Q8BI79 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ccdc40Q8BI79 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Ccdc40Q8BI79 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ccdc40Q8BI79 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Ccdc40Q8BI79 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ccdc40Q8BI79 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ccdc40Q8BI79 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
Ccdc40Q8BI79 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ccdc40Q8BI79 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ccdc40Q8BI79 Gm4430-201ENSMUST00000192413 1943 ntBASIC21.24■□□□□ 0.99
Ccdc40Q8BI79 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Ccdc40Q8BI79 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Ccdc40Q8BI79 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ccdc40Q8BI79 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ccdc40Q8BI79 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
Ccdc40Q8BI79 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ccdc40Q8BI79 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ccdc40Q8BI79 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ccdc40Q8BI79 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ccdc40Q8BI79 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ccdc40Q8BI79 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC21.23■□□□□ 0.99
Ccdc40Q8BI79 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ccdc40Q8BI79 Gm15043-201ENSMUST00000118843 1543 ntBASIC21.23■□□□□ 0.99
Ccdc40Q8BI79 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ccdc40Q8BI79 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ccdc40Q8BI79 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Ccdc40Q8BI79 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ccdc40Q8BI79 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ccdc40Q8BI79 Gm44949-201ENSMUST00000206423 1450 ntBASIC21.22■□□□□ 0.99
Ccdc40Q8BI79 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Ccdc40Q8BI79 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Ccdc40Q8BI79 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Ccdc40Q8BI79 Gm10232-201ENSMUST00000089221 720 ntBASIC21.22■□□□□ 0.99
Ccdc40Q8BI79 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ccdc40Q8BI79 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Ccdc40Q8BI79 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC21.22■□□□□ 0.99
Ccdc40Q8BI79 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ccdc40Q8BI79 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ccdc40Q8BI79 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ccdc40Q8BI79 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Ccdc40Q8BI79 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Ccdc40Q8BI79 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ccdc40Q8BI79 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ccdc40Q8BI79 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ccdc40Q8BI79 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC21.21■□□□□ 0.99
Ccdc40Q8BI79 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ccdc40Q8BI79 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Ccdc40Q8BI79 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC21.21■□□□□ 0.99
Ccdc40Q8BI79 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ccdc40Q8BI79 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC21.21■□□□□ 0.99
Ccdc40Q8BI79 Gm5913-201ENSMUST00000119397 1399 ntBASIC21.21■□□□□ 0.99
Ccdc40Q8BI79 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ccdc40Q8BI79 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc40Q8BI79 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc40Q8BI79 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc40Q8BI79 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Ccdc40Q8BI79 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc40Q8BI79 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc40Q8BI79 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Ccdc40Q8BI79 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc40Q8BI79 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc40Q8BI79 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc40Q8BI79 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc40Q8BI79 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc40Q8BI79 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ccdc40Q8BI79 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Ccdc40Q8BI79 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ccdc40Q8BI79 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
Ccdc40Q8BI79 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC21.19■□□□□ 0.98
Ccdc40Q8BI79 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Ccdc40Q8BI79 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC21.19■□□□□ 0.98
Ccdc40Q8BI79 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ccdc40Q8BI79 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ccdc40Q8BI79 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ccdc40Q8BI79 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc40Q8BI79 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc40Q8BI79 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc40Q8BI79 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Ccdc40Q8BI79 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Ccdc40Q8BI79 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc40Q8BI79 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc40Q8BI79 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 12.8 ms