Protein–RNA interactions for Protein: Q811S7

Ubp1, Upstream-binding protein 1, mousemouse

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubp1Q811S7 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ubp1Q811S7 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Ubp1Q811S7 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Ubp1Q811S7 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ubp1Q811S7 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ubp1Q811S7 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Ubp1Q811S7 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ubp1Q811S7 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Ubp1Q811S7 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC20.21■□□□□ 0.83
Ubp1Q811S7 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ubp1Q811S7 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ubp1Q811S7 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ubp1Q811S7 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ubp1Q811S7 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC20.21■□□□□ 0.83
Ubp1Q811S7 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Ubp1Q811S7 Gm44949-201ENSMUST00000206423 1450 ntBASIC20.21■□□□□ 0.83
Ubp1Q811S7 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Ubp1Q811S7 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ubp1Q811S7 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ubp1Q811S7 Gm13042-201ENSMUST00000119244 1955 ntBASIC20.21■□□□□ 0.83
Ubp1Q811S7 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ubp1Q811S7 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Ubp1Q811S7 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ubp1Q811S7 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Ubp1Q811S7 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC20.2■□□□□ 0.82
Ubp1Q811S7 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC20.2■□□□□ 0.82
Ubp1Q811S7 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ubp1Q811S7 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ubp1Q811S7 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC20.19■□□□□ 0.82
Ubp1Q811S7 Gm22238-201ENSMUST00000175222 88 ntBASIC20.19■□□□□ 0.82
Ubp1Q811S7 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC20.19■□□□□ 0.82
Ubp1Q811S7 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ubp1Q811S7 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Ubp1Q811S7 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Ubp1Q811S7 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ubp1Q811S7 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Ubp1Q811S7 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ubp1Q811S7 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Ubp1Q811S7 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC20.18■□□□□ 0.82
Ubp1Q811S7 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Ubp1Q811S7 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Ubp1Q811S7 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC20.18■□□□□ 0.82
Ubp1Q811S7 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Ubp1Q811S7 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ubp1Q811S7 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Ubp1Q811S7 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC20.17■□□□□ 0.82
Ubp1Q811S7 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ubp1Q811S7 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Ubp1Q811S7 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ubp1Q811S7 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Ubp1Q811S7 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Ubp1Q811S7 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ubp1Q811S7 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Ubp1Q811S7 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ubp1Q811S7 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
Ubp1Q811S7 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ubp1Q811S7 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ubp1Q811S7 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ubp1Q811S7 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ubp1Q811S7 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ubp1Q811S7 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Ubp1Q811S7 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ubp1Q811S7 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Ubp1Q811S7 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Ubp1Q811S7 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ubp1Q811S7 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Ubp1Q811S7 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Ubp1Q811S7 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC20.15■□□□□ 0.82
Ubp1Q811S7 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Ubp1Q811S7 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ubp1Q811S7 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Ubp1Q811S7 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Ubp1Q811S7 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ubp1Q811S7 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Ubp1Q811S7 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC20.14■□□□□ 0.81
Ubp1Q811S7 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ubp1Q811S7 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ubp1Q811S7 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC20.14■□□□□ 0.81
Ubp1Q811S7 Gm5913-201ENSMUST00000119397 1399 ntBASIC20.14■□□□□ 0.81
Ubp1Q811S7 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Ubp1Q811S7 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Ubp1Q811S7 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC20.14■□□□□ 0.81
Ubp1Q811S7 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Ubp1Q811S7 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
Ubp1Q811S7 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ubp1Q811S7 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Ubp1Q811S7 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
Ubp1Q811S7 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ubp1Q811S7 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ubp1Q811S7 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC20.13■□□□□ 0.81
Ubp1Q811S7 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC20.13■□□□□ 0.81
Ubp1Q811S7 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Ubp1Q811S7 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ubp1Q811S7 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC20.13■□□□□ 0.81
Ubp1Q811S7 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ubp1Q811S7 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ubp1Q811S7 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ubp1Q811S7 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ubp1Q811S7 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC20.12■□□□□ 0.81
Ubp1Q811S7 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 50.9 ms