Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rnf220Q6PDX6 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Rnf220Q6PDX6 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rnf220Q6PDX6 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rnf220Q6PDX6 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rnf220Q6PDX6 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rnf220Q6PDX6 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Rnf220Q6PDX6 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC19.3■□□□□ 0.68
Rnf220Q6PDX6 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rnf220Q6PDX6 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rnf220Q6PDX6 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rnf220Q6PDX6 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rnf220Q6PDX6 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rnf220Q6PDX6 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Rnf220Q6PDX6 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Rnf220Q6PDX6 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Rnf220Q6PDX6 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rnf220Q6PDX6 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rnf220Q6PDX6 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rnf220Q6PDX6 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rnf220Q6PDX6 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Rnf220Q6PDX6 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rnf220Q6PDX6 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Rnf220Q6PDX6 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rnf220Q6PDX6 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC19.28■□□□□ 0.68
Rnf220Q6PDX6 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rnf220Q6PDX6 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Rnf220Q6PDX6 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Rnf220Q6PDX6 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rnf220Q6PDX6 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rnf220Q6PDX6 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC19.28■□□□□ 0.68
Rnf220Q6PDX6 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Rnf220Q6PDX6 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Rnf220Q6PDX6 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC19.27■□□□□ 0.68
Rnf220Q6PDX6 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Rnf220Q6PDX6 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC19.27■□□□□ 0.68
Rnf220Q6PDX6 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Rnf220Q6PDX6 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Rnf220Q6PDX6 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Rnf220Q6PDX6 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rnf220Q6PDX6 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rnf220Q6PDX6 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Rnf220Q6PDX6 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rnf220Q6PDX6 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rnf220Q6PDX6 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rnf220Q6PDX6 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC19.26■□□□□ 0.67
Rnf220Q6PDX6 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC19.26■□□□□ 0.67
Rnf220Q6PDX6 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC19.26■□□□□ 0.67
Rnf220Q6PDX6 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rnf220Q6PDX6 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
Rnf220Q6PDX6 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rnf220Q6PDX6 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Rnf220Q6PDX6 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
Rnf220Q6PDX6 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Rnf220Q6PDX6 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Rnf220Q6PDX6 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC19.25■□□□□ 0.67
Rnf220Q6PDX6 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Rnf220Q6PDX6 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Rnf220Q6PDX6 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Rnf220Q6PDX6 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Rnf220Q6PDX6 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rnf220Q6PDX6 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Rnf220Q6PDX6 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rnf220Q6PDX6 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rnf220Q6PDX6 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rnf220Q6PDX6 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Rnf220Q6PDX6 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rnf220Q6PDX6 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rnf220Q6PDX6 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC19.23■□□□□ 0.67
Rnf220Q6PDX6 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rnf220Q6PDX6 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rnf220Q6PDX6 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rnf220Q6PDX6 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC19.23■□□□□ 0.67
Rnf220Q6PDX6 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC19.23■□□□□ 0.67
Rnf220Q6PDX6 Gm6311-201ENSMUST00000073790 878 ntBASIC19.23■□□□□ 0.67
Rnf220Q6PDX6 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rnf220Q6PDX6 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rnf220Q6PDX6 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rnf220Q6PDX6 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC19.23■□□□□ 0.67
Rnf220Q6PDX6 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rnf220Q6PDX6 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rnf220Q6PDX6 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Rnf220Q6PDX6 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rnf220Q6PDX6 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC19.22■□□□□ 0.67
Rnf220Q6PDX6 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC19.22■□□□□ 0.67
Rnf220Q6PDX6 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Rnf220Q6PDX6 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Rnf220Q6PDX6 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Rnf220Q6PDX6 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Rnf220Q6PDX6 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Rnf220Q6PDX6 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC19.22■□□□□ 0.67
Rnf220Q6PDX6 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Rnf220Q6PDX6 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rnf220Q6PDX6 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC19.21■□□□□ 0.67
Rnf220Q6PDX6 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
Rnf220Q6PDX6 Gm44428-201ENSMUST00000204474 874 ntBASIC19.21■□□□□ 0.67
Rnf220Q6PDX6 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC19.21■□□□□ 0.67
Rnf220Q6PDX6 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Rnf220Q6PDX6 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC19.21■□□□□ 0.67
Rnf220Q6PDX6 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 36.2 ms