Protein–RNA interactions for Protein: Q64347

Clcn1, Chloride channel protein 1, mousemouse

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn1Q64347 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC26.19■■□□□ 1.78
Clcn1Q64347 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
Clcn1Q64347 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
Clcn1Q64347 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
Clcn1Q64347 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC26.19■■□□□ 1.78
Clcn1Q64347 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC26.18■■□□□ 1.78
Clcn1Q64347 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC26.18■■□□□ 1.78
Clcn1Q64347 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Clcn1Q64347 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
Clcn1Q64347 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
Clcn1Q64347 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Clcn1Q64347 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
Clcn1Q64347 Gm8770-201ENSMUST00000121113 1109 ntBASIC26.17■■□□□ 1.78
Clcn1Q64347 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Clcn1Q64347 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC26.17■■□□□ 1.78
Clcn1Q64347 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC26.17■■□□□ 1.78
Clcn1Q64347 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Clcn1Q64347 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Clcn1Q64347 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Clcn1Q64347 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC26.16■■□□□ 1.78
Clcn1Q64347 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC26.16■■□□□ 1.78
Clcn1Q64347 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC26.16■■□□□ 1.78
Clcn1Q64347 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC26.16■■□□□ 1.78
Clcn1Q64347 Gm7143-201ENSMUST00000222811 859 ntBASIC26.16■■□□□ 1.78
Clcn1Q64347 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC26.16■■□□□ 1.78
Clcn1Q64347 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Clcn1Q64347 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC26.15■■□□□ 1.78
Clcn1Q64347 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
Clcn1Q64347 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Clcn1Q64347 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Clcn1Q64347 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC26.14■■□□□ 1.78
Clcn1Q64347 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.78
Clcn1Q64347 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
Clcn1Q64347 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC26.14■■□□□ 1.78
Clcn1Q64347 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC26.14■■□□□ 1.78
Clcn1Q64347 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
Clcn1Q64347 Gm43173-201ENSMUST00000202246 593 ntBASIC26.14■■□□□ 1.78
Clcn1Q64347 Wdr70-203ENSMUST00000227371 1130 ntBASIC26.14■■□□□ 1.78
Clcn1Q64347 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC26.14■■□□□ 1.77
Clcn1Q64347 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
Clcn1Q64347 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Clcn1Q64347 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Clcn1Q64347 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Clcn1Q64347 Gm13042-201ENSMUST00000119244 1955 ntBASIC26.13■■□□□ 1.77
Clcn1Q64347 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC26.12■■□□□ 1.77
Clcn1Q64347 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Clcn1Q64347 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC26.12■■□□□ 1.77
Clcn1Q64347 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Clcn1Q64347 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC26.12■■□□□ 1.77
Clcn1Q64347 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
Clcn1Q64347 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Clcn1Q64347 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC26.12■■□□□ 1.77
Clcn1Q64347 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC26.12■■□□□ 1.77
Clcn1Q64347 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Clcn1Q64347 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Clcn1Q64347 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Clcn1Q64347 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
Clcn1Q64347 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
Clcn1Q64347 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Clcn1Q64347 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC26.1■■□□□ 1.77
Clcn1Q64347 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC26.1■■□□□ 1.77
Clcn1Q64347 AC164629.5-201ENSMUST00000220387 632 ntBASIC26.1■■□□□ 1.77
Clcn1Q64347 Gm5576-201ENSMUST00000075809 1236 ntBASIC26.1■■□□□ 1.77
Clcn1Q64347 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Clcn1Q64347 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC26.09■■□□□ 1.77
Clcn1Q64347 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Clcn1Q64347 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Clcn1Q64347 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC26.08■■□□□ 1.77
Clcn1Q64347 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
Clcn1Q64347 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC26.08■■□□□ 1.77
Clcn1Q64347 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
Clcn1Q64347 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
Clcn1Q64347 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Clcn1Q64347 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC26.08■■□□□ 1.77
Clcn1Q64347 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Clcn1Q64347 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Clcn1Q64347 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC26.07■■□□□ 1.76
Clcn1Q64347 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Clcn1Q64347 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Clcn1Q64347 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Clcn1Q64347 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC26.07■■□□□ 1.76
Clcn1Q64347 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Clcn1Q64347 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Clcn1Q64347 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC26.07■■□□□ 1.76
Clcn1Q64347 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
Clcn1Q64347 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
Clcn1Q64347 Gm38160-201ENSMUST00000193090 2499 ntBASIC26.06■■□□□ 1.76
Clcn1Q64347 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC26.06■■□□□ 1.76
Clcn1Q64347 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
Clcn1Q64347 Gm5874-201ENSMUST00000096101 508 ntBASIC26.06■■□□□ 1.76
Clcn1Q64347 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC26.06■■□□□ 1.76
Clcn1Q64347 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Clcn1Q64347 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Clcn1Q64347 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC26.05■■□□□ 1.76
Clcn1Q64347 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Clcn1Q64347 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC26.05■■□□□ 1.76
Clcn1Q64347 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
Clcn1Q64347 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
Clcn1Q64347 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC26.04■■□□□ 1.76
Clcn1Q64347 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Retrieved 100 of 76,532 protein–RNA pairs in 40.6 ms