Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usf1Q61069 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usf1Q61069 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Usf1Q61069 Gm10849-201ENSMUST00000100397 618 ntBASIC18.86■□□□□ 0.61
Usf1Q61069 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usf1Q61069 Gm37179-201ENSMUST00000194862 823 ntBASIC18.86■□□□□ 0.61
Usf1Q61069 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Usf1Q61069 Gm40848-201ENSMUST00000221998 324 ntBASIC18.86■□□□□ 0.61
Usf1Q61069 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Usf1Q61069 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Usf1Q61069 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usf1Q61069 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usf1Q61069 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usf1Q61069 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usf1Q61069 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usf1Q61069 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Usf1Q61069 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usf1Q61069 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Usf1Q61069 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC18.84■□□□□ 0.61
Usf1Q61069 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
Usf1Q61069 Gm43530-201ENSMUST00000195920 274 ntBASIC18.84■□□□□ 0.61
Usf1Q61069 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Usf1Q61069 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Usf1Q61069 Gm10129-202ENSMUST00000193100 1316 ntBASIC18.83■□□□□ 0.61
Usf1Q61069 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Usf1Q61069 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Usf1Q61069 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
Usf1Q61069 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC18.82■□□□□ 0.6
Usf1Q61069 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Usf1Q61069 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usf1Q61069 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usf1Q61069 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC18.81■□□□□ 0.6
Usf1Q61069 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usf1Q61069 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usf1Q61069 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
Usf1Q61069 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Usf1Q61069 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usf1Q61069 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usf1Q61069 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Usf1Q61069 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC18.8■□□□□ 0.6
Usf1Q61069 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC18.8■□□□□ 0.6
Usf1Q61069 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usf1Q61069 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usf1Q61069 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC18.8■□□□□ 0.6
Usf1Q61069 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usf1Q61069 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usf1Q61069 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usf1Q61069 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC18.79■□□□□ 0.6
Usf1Q61069 Gm18671-201ENSMUST00000214826 683 ntBASIC18.79■□□□□ 0.6
Usf1Q61069 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC18.79■□□□□ 0.6
Usf1Q61069 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Usf1Q61069 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usf1Q61069 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usf1Q61069 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usf1Q61069 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usf1Q61069 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usf1Q61069 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usf1Q61069 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usf1Q61069 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Usf1Q61069 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usf1Q61069 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usf1Q61069 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usf1Q61069 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usf1Q61069 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usf1Q61069 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
Usf1Q61069 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC18.77■□□□□ 0.6
Usf1Q61069 CT025689.6-201ENSMUST00000224991 1104 ntBASIC18.77■□□□□ 0.6
Usf1Q61069 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usf1Q61069 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Usf1Q61069 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Usf1Q61069 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usf1Q61069 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usf1Q61069 Smad6-203ENSMUST00000179458 273 ntBASIC18.76■□□□□ 0.59
Usf1Q61069 Gm27011-201ENSMUST00000182352 972 ntBASIC18.76■□□□□ 0.59
Usf1Q61069 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC18.76■□□□□ 0.59
Usf1Q61069 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usf1Q61069 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usf1Q61069 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usf1Q61069 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Usf1Q61069 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usf1Q61069 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usf1Q61069 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usf1Q61069 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC18.75■□□□□ 0.59
Usf1Q61069 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usf1Q61069 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usf1Q61069 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usf1Q61069 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC18.74■□□□□ 0.59
Usf1Q61069 Gm10209-201ENSMUST00000203397 1607 ntBASIC18.74■□□□□ 0.59
Usf1Q61069 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usf1Q61069 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Usf1Q61069 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC18.74■□□□□ 0.59
Usf1Q61069 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC18.74■□□□□ 0.59
Usf1Q61069 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usf1Q61069 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Usf1Q61069 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
Usf1Q61069 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC18.73■□□□□ 0.59
Usf1Q61069 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Usf1Q61069 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Usf1Q61069 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC18.73■□□□□ 0.59
Usf1Q61069 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 44.7 ms