Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Nr1h4Q60641 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Nr1h4Q60641 Gm7332-201ENSMUST00000118351 454 ntBASIC19.5■□□□□ 0.71
Nr1h4Q60641 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
Nr1h4Q60641 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Nr1h4Q60641 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC19.5■□□□□ 0.71
Nr1h4Q60641 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
Nr1h4Q60641 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
Nr1h4Q60641 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
Nr1h4Q60641 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Nr1h4Q60641 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
Nr1h4Q60641 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Nr1h4Q60641 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Nr1h4Q60641 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Nr1h4Q60641 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Nr1h4Q60641 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Nr1h4Q60641 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
Nr1h4Q60641 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Nr1h4Q60641 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Nr1h4Q60641 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Nr1h4Q60641 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
Nr1h4Q60641 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Nr1h4Q60641 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC19.48■□□□□ 0.71
Nr1h4Q60641 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
Nr1h4Q60641 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Nr1h4Q60641 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Nr1h4Q60641 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Nr1h4Q60641 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Nr1h4Q60641 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Nr1h4Q60641 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Nr1h4Q60641 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Nr1h4Q60641 Snhg20-203ENSMUST00000182811 2153 ntBASIC19.47■□□□□ 0.71
Nr1h4Q60641 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Nr1h4Q60641 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC19.47■□□□□ 0.71
Nr1h4Q60641 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Nr1h4Q60641 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Nr1h4Q60641 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
Nr1h4Q60641 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Nr1h4Q60641 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Nr1h4Q60641 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC19.47■□□□□ 0.71
Nr1h4Q60641 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Nr1h4Q60641 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Nr1h4Q60641 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Nr1h4Q60641 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Nr1h4Q60641 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Nr1h4Q60641 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Nr1h4Q60641 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Nr1h4Q60641 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Nr1h4Q60641 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Nr1h4Q60641 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC19.46■□□□□ 0.71
Nr1h4Q60641 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Nr1h4Q60641 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Nr1h4Q60641 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Nr1h4Q60641 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Nr1h4Q60641 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC19.45■□□□□ 0.7
Nr1h4Q60641 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Nr1h4Q60641 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Nr1h4Q60641 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Nr1h4Q60641 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Nr1h4Q60641 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Nr1h4Q60641 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
Nr1h4Q60641 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Nr1h4Q60641 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Nr1h4Q60641 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Nr1h4Q60641 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Nr1h4Q60641 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC19.44■□□□□ 0.7
Nr1h4Q60641 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Nr1h4Q60641 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Nr1h4Q60641 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Nr1h4Q60641 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nr1h4Q60641 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nr1h4Q60641 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nr1h4Q60641 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nr1h4Q60641 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nr1h4Q60641 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nr1h4Q60641 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nr1h4Q60641 Gm10616-201ENSMUST00000205285 2127 ntBASIC19.43■□□□□ 0.7
Nr1h4Q60641 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Nr1h4Q60641 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Nr1h4Q60641 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Nr1h4Q60641 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC19.42■□□□□ 0.7
Nr1h4Q60641 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Nr1h4Q60641 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Nr1h4Q60641 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nr1h4Q60641 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Nr1h4Q60641 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Nr1h4Q60641 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nr1h4Q60641 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC19.41■□□□□ 0.7
Nr1h4Q60641 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nr1h4Q60641 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nr1h4Q60641 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nr1h4Q60641 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nr1h4Q60641 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Nr1h4Q60641 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Nr1h4Q60641 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Nr1h4Q60641 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Nr1h4Q60641 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Nr1h4Q60641 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Nr1h4Q60641 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Nr1h4Q60641 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 12.1 ms