Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim40Q3UWA4 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim40Q3UWA4 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim40Q3UWA4 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC19.24■□□□□ 0.67
Trim40Q3UWA4 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim40Q3UWA4 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC19.24■□□□□ 0.67
Trim40Q3UWA4 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim40Q3UWA4 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Trim40Q3UWA4 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Trim40Q3UWA4 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim40Q3UWA4 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim40Q3UWA4 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim40Q3UWA4 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Trim40Q3UWA4 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim40Q3UWA4 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim40Q3UWA4 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim40Q3UWA4 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Trim40Q3UWA4 Scarna2-201ENSMUST00000157560 414 ntBASIC19.23■□□□□ 0.67
Trim40Q3UWA4 Gm9806-201ENSMUST00000051080 552 ntBASIC19.23■□□□□ 0.67
Trim40Q3UWA4 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Trim40Q3UWA4 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Trim40Q3UWA4 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC19.22■□□□□ 0.67
Trim40Q3UWA4 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim40Q3UWA4 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim40Q3UWA4 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC19.22■□□□□ 0.67
Trim40Q3UWA4 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC19.22■□□□□ 0.67
Trim40Q3UWA4 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC19.22■□□□□ 0.67
Trim40Q3UWA4 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Trim40Q3UWA4 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
Trim40Q3UWA4 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Trim40Q3UWA4 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Trim40Q3UWA4 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim40Q3UWA4 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Trim40Q3UWA4 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Trim40Q3UWA4 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim40Q3UWA4 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim40Q3UWA4 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC19.21■□□□□ 0.67
Trim40Q3UWA4 Gm16437-201ENSMUST00000025669 507 ntBASIC19.21■□□□□ 0.67
Trim40Q3UWA4 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Trim40Q3UWA4 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trim40Q3UWA4 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trim40Q3UWA4 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC19.21■□□□□ 0.67
Trim40Q3UWA4 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trim40Q3UWA4 Gm43545-201ENSMUST00000196765 2779 ntBASIC19.21■□□□□ 0.67
Trim40Q3UWA4 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim40Q3UWA4 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim40Q3UWA4 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim40Q3UWA4 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC19.2■□□□□ 0.66
Trim40Q3UWA4 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim40Q3UWA4 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim40Q3UWA4 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim40Q3UWA4 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim40Q3UWA4 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Trim40Q3UWA4 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Trim40Q3UWA4 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim40Q3UWA4 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim40Q3UWA4 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim40Q3UWA4 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim40Q3UWA4 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC19.19■□□□□ 0.66
Trim40Q3UWA4 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Trim40Q3UWA4 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim40Q3UWA4 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim40Q3UWA4 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC19.18■□□□□ 0.66
Trim40Q3UWA4 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim40Q3UWA4 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim40Q3UWA4 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim40Q3UWA4 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Trim40Q3UWA4 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Trim40Q3UWA4 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim40Q3UWA4 Gm11687-201ENSMUST00000118911 886 ntBASIC19.17■□□□□ 0.66
Trim40Q3UWA4 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim40Q3UWA4 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim40Q3UWA4 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Trim40Q3UWA4 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim40Q3UWA4 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim40Q3UWA4 Gm5131-201ENSMUST00000212776 1238 ntBASIC19.16■□□□□ 0.66
Trim40Q3UWA4 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim40Q3UWA4 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim40Q3UWA4 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim40Q3UWA4 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC19.16■□□□□ 0.66
Trim40Q3UWA4 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Trim40Q3UWA4 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim40Q3UWA4 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim40Q3UWA4 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim40Q3UWA4 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim40Q3UWA4 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim40Q3UWA4 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim40Q3UWA4 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim40Q3UWA4 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim40Q3UWA4 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC19.15■□□□□ 0.66
Trim40Q3UWA4 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim40Q3UWA4 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim40Q3UWA4 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trim40Q3UWA4 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.66
Trim40Q3UWA4 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
Trim40Q3UWA4 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
Trim40Q3UWA4 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trim40Q3UWA4 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC19.14■□□□□ 0.65
Trim40Q3UWA4 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC19.14■□□□□ 0.65
Trim40Q3UWA4 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms