Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC24.16■■□□□ 1.46
Limch1Q3UH68 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Limch1Q3UH68 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Limch1Q3UH68 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Limch1Q3UH68 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
Limch1Q3UH68 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
Limch1Q3UH68 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC24.16■■□□□ 1.46
Limch1Q3UH68 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC24.16■■□□□ 1.46
Limch1Q3UH68 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
Limch1Q3UH68 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC24.16■■□□□ 1.46
Limch1Q3UH68 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC24.16■■□□□ 1.46
Limch1Q3UH68 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Limch1Q3UH68 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Limch1Q3UH68 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Limch1Q3UH68 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC24.15■■□□□ 1.46
Limch1Q3UH68 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Limch1Q3UH68 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Limch1Q3UH68 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC24.15■■□□□ 1.46
Limch1Q3UH68 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC24.15■■□□□ 1.46
Limch1Q3UH68 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
Limch1Q3UH68 Gm22238-201ENSMUST00000175222 88 ntBASIC24.15■■□□□ 1.46
Limch1Q3UH68 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
Limch1Q3UH68 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
Limch1Q3UH68 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Limch1Q3UH68 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
Limch1Q3UH68 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
Limch1Q3UH68 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
Limch1Q3UH68 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
Limch1Q3UH68 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Limch1Q3UH68 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC24.14■■□□□ 1.45
Limch1Q3UH68 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Limch1Q3UH68 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Limch1Q3UH68 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC24.14■■□□□ 1.45
Limch1Q3UH68 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Limch1Q3UH68 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Limch1Q3UH68 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Limch1Q3UH68 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
Limch1Q3UH68 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC24.13■■□□□ 1.45
Limch1Q3UH68 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
Limch1Q3UH68 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC24.13■■□□□ 1.45
Limch1Q3UH68 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Limch1Q3UH68 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Limch1Q3UH68 Gm43034-201ENSMUST00000198678 1364 ntBASIC24.13■■□□□ 1.45
Limch1Q3UH68 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Limch1Q3UH68 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Limch1Q3UH68 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Limch1Q3UH68 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
Limch1Q3UH68 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC24.12■■□□□ 1.45
Limch1Q3UH68 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Limch1Q3UH68 Gm9847-201ENSMUST00000052528 599 ntBASIC24.12■■□□□ 1.45
Limch1Q3UH68 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC24.11■■□□□ 1.45
Limch1Q3UH68 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC24.11■■□□□ 1.45
Limch1Q3UH68 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC24.11■■□□□ 1.45
Limch1Q3UH68 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC24.11■■□□□ 1.45
Limch1Q3UH68 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Limch1Q3UH68 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
Limch1Q3UH68 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC24.11■■□□□ 1.45
Limch1Q3UH68 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC24.1■■□□□ 1.45
Limch1Q3UH68 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC24.1■■□□□ 1.45
Limch1Q3UH68 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC24.1■■□□□ 1.45
Limch1Q3UH68 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC24.1■■□□□ 1.45
Limch1Q3UH68 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC24.1■■□□□ 1.45
Limch1Q3UH68 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Limch1Q3UH68 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC24.1■■□□□ 1.45
Limch1Q3UH68 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
Limch1Q3UH68 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Limch1Q3UH68 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Limch1Q3UH68 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
Limch1Q3UH68 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Limch1Q3UH68 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Limch1Q3UH68 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
Limch1Q3UH68 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC24.09■■□□□ 1.45
Limch1Q3UH68 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Limch1Q3UH68 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC24.08■■□□□ 1.45
Limch1Q3UH68 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
Limch1Q3UH68 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
Limch1Q3UH68 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Limch1Q3UH68 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Limch1Q3UH68 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC24.07■■□□□ 1.44
Limch1Q3UH68 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC24.07■■□□□ 1.44
Limch1Q3UH68 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Limch1Q3UH68 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC24.07■■□□□ 1.44
Limch1Q3UH68 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC24.07■■□□□ 1.44
Limch1Q3UH68 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Limch1Q3UH68 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Limch1Q3UH68 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Limch1Q3UH68 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Limch1Q3UH68 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Limch1Q3UH68 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC24.06■■□□□ 1.44
Limch1Q3UH68 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Limch1Q3UH68 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Limch1Q3UH68 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC24.06■■□□□ 1.44
Limch1Q3UH68 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
Limch1Q3UH68 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Limch1Q3UH68 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC24.05■■□□□ 1.44
Limch1Q3UH68 AC124392.1-201ENSMUST00000225172 5324 ntBASIC24.05■■□□□ 1.44
Limch1Q3UH68 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
Limch1Q3UH68 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
Limch1Q3UH68 Gm21956-201ENSMUST00000179946 522 ntBASIC24.05■■□□□ 1.44
Limch1Q3UH68 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms