Protein–RNA interactions for Protein: Q1W617

Shroom4, Protein Shroom4, mousemouse

Predictions only

Length 1,475 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shroom4Q1W617 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC33.32■■■□□ 2.92
Shroom4Q1W617 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC33.31■■■□□ 2.92
Shroom4Q1W617 Gm7291-201ENSMUST00000199147 382 ntBASIC33.31■■■□□ 2.92
Shroom4Q1W617 Gm10493-201ENSMUST00000097270 612 ntBASIC33.31■■■□□ 2.92
Shroom4Q1W617 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC33.31■■■□□ 2.92
Shroom4Q1W617 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC33.31■■■□□ 2.92
Shroom4Q1W617 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC33.31■■■□□ 2.92
Shroom4Q1W617 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC33.31■■■□□ 2.92
Shroom4Q1W617 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC33.31■■■□□ 2.92
Shroom4Q1W617 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC33.3■■■□□ 2.92
Shroom4Q1W617 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC33.3■■■□□ 2.92
Shroom4Q1W617 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC33.3■■■□□ 2.92
Shroom4Q1W617 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC33.3■■■□□ 2.92
Shroom4Q1W617 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC33.3■■■□□ 2.92
Shroom4Q1W617 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC33.3■■■□□ 2.92
Shroom4Q1W617 Gm40848-201ENSMUST00000221998 324 ntBASIC33.3■■■□□ 2.92
Shroom4Q1W617 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC33.3■■■□□ 2.92
Shroom4Q1W617 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC33.29■■■□□ 2.92
Shroom4Q1W617 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC33.28■■■□□ 2.92
Shroom4Q1W617 Gm43060-201ENSMUST00000200621 289 ntBASIC33.28■■■□□ 2.92
Shroom4Q1W617 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC33.28■■■□□ 2.92
Shroom4Q1W617 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC33.27■■■□□ 2.92
Shroom4Q1W617 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC33.27■■■□□ 2.92
Shroom4Q1W617 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC33.27■■■□□ 2.92
Shroom4Q1W617 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC33.27■■■□□ 2.92
Shroom4Q1W617 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC33.27■■■□□ 2.92
Shroom4Q1W617 AC153962.1-201ENSMUST00000218530 1948 ntBASIC33.26■■■□□ 2.92
Shroom4Q1W617 Gm10129-202ENSMUST00000193100 1316 ntBASIC33.26■■■□□ 2.92
Shroom4Q1W617 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC33.26■■■□□ 2.92
Shroom4Q1W617 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC33.26■■■□□ 2.92
Shroom4Q1W617 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC33.26■■■□□ 2.91
Shroom4Q1W617 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC33.26■■■□□ 2.91
Shroom4Q1W617 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC33.26■■■□□ 2.91
Shroom4Q1W617 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC33.26■■■□□ 2.91
Shroom4Q1W617 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC33.25■■■□□ 2.91
Shroom4Q1W617 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC33.25■■■□□ 2.91
Shroom4Q1W617 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC33.25■■■□□ 2.91
Shroom4Q1W617 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC33.25■■■□□ 2.91
Shroom4Q1W617 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC33.24■■■□□ 2.91
Shroom4Q1W617 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC33.24■■■□□ 2.91
Shroom4Q1W617 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC33.24■■■□□ 2.91
Shroom4Q1W617 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC33.24■■■□□ 2.91
Shroom4Q1W617 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC33.23■■■□□ 2.91
Shroom4Q1W617 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC33.23■■■□□ 2.91
Shroom4Q1W617 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC33.23■■■□□ 2.91
Shroom4Q1W617 Smad6-203ENSMUST00000179458 273 ntBASIC33.23■■■□□ 2.91
Shroom4Q1W617 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC33.22■■■□□ 2.91
Shroom4Q1W617 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC33.22■■■□□ 2.91
Shroom4Q1W617 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC33.22■■■□□ 2.91
Shroom4Q1W617 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC33.22■■■□□ 2.91
Shroom4Q1W617 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC33.22■■■□□ 2.91
Shroom4Q1W617 Gm10209-201ENSMUST00000203397 1607 ntBASIC33.21■■■□□ 2.91
Shroom4Q1W617 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC33.21■■■□□ 2.91
Shroom4Q1W617 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC33.21■■■□□ 2.91
Shroom4Q1W617 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC33.21■■■□□ 2.91
Shroom4Q1W617 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC33.21■■■□□ 2.91
Shroom4Q1W617 Gm27405-201ENSMUST00000184201 112 ntBASIC33.21■■■□□ 2.91
Shroom4Q1W617 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC33.21■■■□□ 2.91
Shroom4Q1W617 AC099934.2-201ENSMUST00000196389 70 ntBASIC33.21■■■□□ 2.91
Shroom4Q1W617 AC156953.1-201ENSMUST00000196953 70 ntBASIC33.21■■■□□ 2.91
Shroom4Q1W617 AC157822.2-201ENSMUST00000200291 70 ntBASIC33.21■■■□□ 2.91
Shroom4Q1W617 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC33.21■■■□□ 2.91
Shroom4Q1W617 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC33.21■■■□□ 2.91
Shroom4Q1W617 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC33.21■■■□□ 2.91
Shroom4Q1W617 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC33.2■■■□□ 2.91
Shroom4Q1W617 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC33.2■■■□□ 2.91
Shroom4Q1W617 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC33.2■■■□□ 2.9
Shroom4Q1W617 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC33.19■■■□□ 2.9
Shroom4Q1W617 AC164883.3-201ENSMUST00000227396 1774 ntBASIC33.19■■■□□ 2.9
Shroom4Q1W617 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
Shroom4Q1W617 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC33.18■■■□□ 2.9
Shroom4Q1W617 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC33.18■■■□□ 2.9
Shroom4Q1W617 Gm42418-201ENSMUST00000182010 1831 ntBASIC33.18■■■□□ 2.9
Shroom4Q1W617 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC33.18■■■□□ 2.9
Shroom4Q1W617 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
Shroom4Q1W617 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC33.18■■■□□ 2.9
Shroom4Q1W617 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC33.18■■■□□ 2.9
Shroom4Q1W617 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
Shroom4Q1W617 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC33.17■■■□□ 2.9
Shroom4Q1W617 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC33.17■■■□□ 2.9
Shroom4Q1W617 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC33.17■■■□□ 2.9
Shroom4Q1W617 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC33.17■■■□□ 2.9
Shroom4Q1W617 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC33.17■■■□□ 2.9
Shroom4Q1W617 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC33.17■■■□□ 2.9
Shroom4Q1W617 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
Shroom4Q1W617 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
Shroom4Q1W617 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
Shroom4Q1W617 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC33.16■■■□□ 2.9
Shroom4Q1W617 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
Shroom4Q1W617 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC33.16■■■□□ 2.9
Shroom4Q1W617 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC33.16■■■□□ 2.9
Shroom4Q1W617 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC33.16■■■□□ 2.9
Shroom4Q1W617 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
Shroom4Q1W617 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC33.15■■■□□ 2.9
Shroom4Q1W617 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC33.15■■■□□ 2.9
Shroom4Q1W617 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC33.15■■■□□ 2.9
Shroom4Q1W617 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC33.15■■■□□ 2.9
Shroom4Q1W617 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC33.15■■■□□ 2.9
Shroom4Q1W617 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC33.15■■■□□ 2.9
Shroom4Q1W617 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC33.15■■■□□ 2.9
Retrieved 100 of 76,532 protein–RNA pairs in 15.7 ms