Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
Col8a1Q00780 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC17.53■□□□□ 0.4
Col8a1Q00780 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Col8a1Q00780 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col8a1Q00780 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC17.53■□□□□ 0.4
Col8a1Q00780 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Col8a1Q00780 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Col8a1Q00780 Gm40848-201ENSMUST00000221998 324 ntBASIC17.53■□□□□ 0.4
Col8a1Q00780 AC158990.1-201ENSMUST00000221450 2016 ntBASIC17.53■□□□□ 0.4
Col8a1Q00780 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Col8a1Q00780 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col8a1Q00780 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col8a1Q00780 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Col8a1Q00780 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC17.52■□□□□ 0.4
Col8a1Q00780 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Col8a1Q00780 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Col8a1Q00780 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Col8a1Q00780 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
Col8a1Q00780 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col8a1Q00780 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col8a1Q00780 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Col8a1Q00780 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
Col8a1Q00780 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Col8a1Q00780 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Col8a1Q00780 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Col8a1Q00780 Gm6085-201ENSMUST00000182774 1470 ntBASIC17.5■□□□□ 0.39
Col8a1Q00780 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col8a1Q00780 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col8a1Q00780 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Col8a1Q00780 Gm12669-201ENSMUST00000122162 1009 ntBASIC17.5■□□□□ 0.39
Col8a1Q00780 Gm10657-201ENSMUST00000193528 1031 ntBASIC17.5■□□□□ 0.39
Col8a1Q00780 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Col8a1Q00780 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col8a1Q00780 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col8a1Q00780 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col8a1Q00780 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
Col8a1Q00780 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC17.49■□□□□ 0.39
Col8a1Q00780 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC17.49■□□□□ 0.39
Col8a1Q00780 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col8a1Q00780 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col8a1Q00780 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Col8a1Q00780 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col8a1Q00780 Gm10129-202ENSMUST00000193100 1316 ntBASIC17.48■□□□□ 0.39
Col8a1Q00780 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Col8a1Q00780 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col8a1Q00780 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC17.48■□□□□ 0.39
Col8a1Q00780 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Col8a1Q00780 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col8a1Q00780 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
Col8a1Q00780 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col8a1Q00780 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Col8a1Q00780 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC17.48■□□□□ 0.39
Col8a1Q00780 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Col8a1Q00780 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Col8a1Q00780 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col8a1Q00780 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Col8a1Q00780 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Col8a1Q00780 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Col8a1Q00780 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC17.47■□□□□ 0.39
Col8a1Q00780 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC17.47■□□□□ 0.39
Col8a1Q00780 Gm18671-201ENSMUST00000214826 683 ntBASIC17.47■□□□□ 0.39
Col8a1Q00780 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Col8a1Q00780 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col8a1Q00780 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Col8a1Q00780 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Col8a1Q00780 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col8a1Q00780 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col8a1Q00780 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col8a1Q00780 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col8a1Q00780 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Col8a1Q00780 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
Col8a1Q00780 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col8a1Q00780 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC17.46■□□□□ 0.39
Col8a1Q00780 Gm7160-202ENSMUST00000188519 1027 ntBASIC17.46■□□□□ 0.39
Col8a1Q00780 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC17.46■□□□□ 0.39
Col8a1Q00780 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC17.46■□□□□ 0.39
Col8a1Q00780 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC17.46■□□□□ 0.39
Col8a1Q00780 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col8a1Q00780 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col8a1Q00780 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col8a1Q00780 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col8a1Q00780 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
Col8a1Q00780 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col8a1Q00780 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col8a1Q00780 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Col8a1Q00780 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col8a1Q00780 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Col8a1Q00780 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col8a1Q00780 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC17.44■□□□□ 0.38
Col8a1Q00780 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC17.44■□□□□ 0.38
Col8a1Q00780 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col8a1Q00780 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC17.44■□□□□ 0.38
Col8a1Q00780 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC17.44■□□□□ 0.38
Col8a1Q00780 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col8a1Q00780 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col8a1Q00780 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC17.44■□□□□ 0.38
Col8a1Q00780 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col8a1Q00780 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col8a1Q00780 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Col8a1Q00780 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms