Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Msx1P13297 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Msx1P13297 AC158990.1-201ENSMUST00000221450 2016 ntBASIC19.44■□□□□ 0.7
Msx1P13297 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Msx1P13297 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Msx1P13297 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Msx1P13297 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC19.44■□□□□ 0.7
Msx1P13297 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Msx1P13297 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Msx1P13297 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Msx1P13297 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Msx1P13297 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Msx1P13297 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC19.44■□□□□ 0.7
Msx1P13297 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Msx1P13297 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Msx1P13297 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Msx1P13297 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
Msx1P13297 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Msx1P13297 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Msx1P13297 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Msx1P13297 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Msx1P13297 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Msx1P13297 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Msx1P13297 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Msx1P13297 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Msx1P13297 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Msx1P13297 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Msx1P13297 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Msx1P13297 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Msx1P13297 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Msx1P13297 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Msx1P13297 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Msx1P13297 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Msx1P13297 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Msx1P13297 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
Msx1P13297 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC19.41■□□□□ 0.7
Msx1P13297 Gm18284-201ENSMUST00000172604 624 ntBASIC19.41■□□□□ 0.7
Msx1P13297 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Msx1P13297 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Msx1P13297 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Msx1P13297 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Msx1P13297 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Msx1P13297 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Msx1P13297 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Msx1P13297 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Msx1P13297 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Msx1P13297 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Msx1P13297 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Msx1P13297 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Msx1P13297 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC19.4■□□□□ 0.7
Msx1P13297 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Msx1P13297 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Msx1P13297 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Msx1P13297 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Msx1P13297 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Msx1P13297 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC19.39■□□□□ 0.69
Msx1P13297 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Msx1P13297 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC19.39■□□□□ 0.69
Msx1P13297 Gm43403-201ENSMUST00000198011 1786 ntBASIC19.39■□□□□ 0.69
Msx1P13297 AC164883.3-201ENSMUST00000227396 1774 ntBASIC19.39■□□□□ 0.69
Msx1P13297 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Msx1P13297 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC19.39■□□□□ 0.69
Msx1P13297 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Msx1P13297 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Msx1P13297 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Msx1P13297 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Msx1P13297 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Msx1P13297 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
Msx1P13297 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Msx1P13297 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Msx1P13297 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Msx1P13297 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Msx1P13297 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Msx1P13297 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Msx1P13297 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Msx1P13297 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC19.36■□□□□ 0.69
Msx1P13297 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Msx1P13297 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Msx1P13297 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
Msx1P13297 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Msx1P13297 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Msx1P13297 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC19.35■□□□□ 0.69
Msx1P13297 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC19.35■□□□□ 0.69
Msx1P13297 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Msx1P13297 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Msx1P13297 Gm10620-201ENSMUST00000098379 1332 ntBASIC19.34■□□□□ 0.69
Msx1P13297 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC19.34■□□□□ 0.69
Msx1P13297 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Msx1P13297 Gm9207-201ENSMUST00000198773 1115 ntBASIC19.34■□□□□ 0.69
Msx1P13297 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Msx1P13297 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC19.34■□□□□ 0.69
Msx1P13297 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Msx1P13297 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Msx1P13297 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Msx1P13297 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Msx1P13297 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Msx1P13297 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Msx1P13297 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Msx1P13297 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC19.33■□□□□ 0.68
Msx1P13297 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 23.9 ms