Protein–RNA interactions for Protein: B1AVK5

Col4a6, Collagen, type IV, alpha 6, mousemouse

Predictions only

Length 1,691 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a6B1AVK5 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC21.71■■□□□ 1.07
Col4a6B1AVK5 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col4a6B1AVK5 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC21.71■■□□□ 1.07
Col4a6B1AVK5 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col4a6B1AVK5 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col4a6B1AVK5 Gm40848-201ENSMUST00000221998 324 ntBASIC21.7■■□□□ 1.06
Col4a6B1AVK5 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col4a6B1AVK5 Gm27405-201ENSMUST00000184201 112 ntBASIC21.69■■□□□ 1.06
Col4a6B1AVK5 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC21.69■■□□□ 1.06
Col4a6B1AVK5 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col4a6B1AVK5 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
Col4a6B1AVK5 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC21.68■■□□□ 1.06
Col4a6B1AVK5 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
Col4a6B1AVK5 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Col4a6B1AVK5 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Col4a6B1AVK5 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Col4a6B1AVK5 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC21.67■■□□□ 1.06
Col4a6B1AVK5 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC21.67■■□□□ 1.06
Col4a6B1AVK5 AC099934.2-201ENSMUST00000196389 70 ntBASIC21.67■■□□□ 1.06
Col4a6B1AVK5 AC156953.1-201ENSMUST00000196953 70 ntBASIC21.67■■□□□ 1.06
Col4a6B1AVK5 AC157822.2-201ENSMUST00000200291 70 ntBASIC21.67■■□□□ 1.06
Col4a6B1AVK5 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Col4a6B1AVK5 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
Col4a6B1AVK5 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Col4a6B1AVK5 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Col4a6B1AVK5 AC153962.1-201ENSMUST00000218530 1948 ntBASIC21.66■■□□□ 1.06
Col4a6B1AVK5 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Col4a6B1AVK5 Gm37179-201ENSMUST00000194862 823 ntBASIC21.66■■□□□ 1.06
Col4a6B1AVK5 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col4a6B1AVK5 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Col4a6B1AVK5 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Col4a6B1AVK5 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Col4a6B1AVK5 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
Col4a6B1AVK5 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col4a6B1AVK5 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
Col4a6B1AVK5 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col4a6B1AVK5 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Col4a6B1AVK5 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Col4a6B1AVK5 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col4a6B1AVK5 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col4a6B1AVK5 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
Col4a6B1AVK5 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC21.65■■□□□ 1.06
Col4a6B1AVK5 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC21.65■■□□□ 1.06
Col4a6B1AVK5 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC21.65■■□□□ 1.06
Col4a6B1AVK5 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Col4a6B1AVK5 Gm43060-201ENSMUST00000200621 289 ntBASIC21.65■■□□□ 1.06
Col4a6B1AVK5 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Col4a6B1AVK5 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Col4a6B1AVK5 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Col4a6B1AVK5 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Col4a6B1AVK5 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Col4a6B1AVK5 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC21.64■■□□□ 1.05
Col4a6B1AVK5 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC21.64■■□□□ 1.05
Col4a6B1AVK5 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Col4a6B1AVK5 Smad6-203ENSMUST00000179458 273 ntBASIC21.63■■□□□ 1.05
Col4a6B1AVK5 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC21.63■■□□□ 1.05
Col4a6B1AVK5 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Col4a6B1AVK5 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Col4a6B1AVK5 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Col4a6B1AVK5 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Col4a6B1AVK5 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC21.63■■□□□ 1.05
Col4a6B1AVK5 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Col4a6B1AVK5 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Col4a6B1AVK5 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC21.62■■□□□ 1.05
Col4a6B1AVK5 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC21.62■■□□□ 1.05
Col4a6B1AVK5 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
Col4a6B1AVK5 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
Col4a6B1AVK5 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC21.61■■□□□ 1.05
Col4a6B1AVK5 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Col4a6B1AVK5 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
Col4a6B1AVK5 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
Col4a6B1AVK5 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
Col4a6B1AVK5 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Col4a6B1AVK5 AC165080.2-201ENSMUST00000217491 1530 ntBASIC21.61■■□□□ 1.05
Col4a6B1AVK5 Gm10033-202ENSMUST00000211874 928 ntBASIC21.6■■□□□ 1.05
Col4a6B1AVK5 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
Col4a6B1AVK5 Il17rd-202ENSMUST00000223942 2186 ntBASIC21.6■■□□□ 1.05
Col4a6B1AVK5 Spcs1-207ENSMUST00000228767 1008 ntBASIC21.6■■□□□ 1.05
Col4a6B1AVK5 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Col4a6B1AVK5 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Col4a6B1AVK5 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Col4a6B1AVK5 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Col4a6B1AVK5 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Col4a6B1AVK5 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Col4a6B1AVK5 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Col4a6B1AVK5 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC21.59■■□□□ 1.05
Col4a6B1AVK5 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Col4a6B1AVK5 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Col4a6B1AVK5 Gm10209-201ENSMUST00000203397 1607 ntBASIC21.58■■□□□ 1.05
Col4a6B1AVK5 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC21.58■■□□□ 1.05
Col4a6B1AVK5 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Col4a6B1AVK5 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Col4a6B1AVK5 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Col4a6B1AVK5 Gm42569-201ENSMUST00000200539 472 ntBASIC21.58■■□□□ 1.05
Col4a6B1AVK5 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
Col4a6B1AVK5 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Col4a6B1AVK5 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
Col4a6B1AVK5 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Col4a6B1AVK5 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Col4a6B1AVK5 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Retrieved 100 of 76,532 protein–RNA pairs in 24.1 ms