Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Strc-201ENSMUST00000038389 5756 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Gm11494-201ENSMUST00000142279 1738 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Cysltr2-202ENSMUST00000169168 1744 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Rims4-201ENSMUST00000044734 4962 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Rtn4-202ENSMUST00000078830 3615 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Misp-202ENSMUST00000169041 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 AC164426.2-201ENSMUST00000225993 2492 ntBASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Spata48-201ENSMUST00000020410 1430 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Scaf4-202ENSMUST00000163419 4169 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Adcyap1-201ENSMUST00000064775 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Tenm3-206ENSMUST00000190840 8663 ntAPPRIS ALT1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Abcb9-201ENSMUST00000031354 3661 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Cdk13-207ENSMUST00000223490 12548 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Prr3-203ENSMUST00000172429 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Fut8-201ENSMUST00000062804 3358 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Rps6kb1-202ENSMUST00000058286 3250 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Gm37348-201ENSMUST00000193104 1789 ntBASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Gm43267-201ENSMUST00000199664 1796 ntBASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Sorcs1-205ENSMUST00000209413 4398 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Prx-204ENSMUST00000125990 4298 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Tgfbr1-202ENSMUST00000044234 2861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Wdr20rt-201ENSMUST00000046331 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Phkg2-201ENSMUST00000033086 1570 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Polr1b-201ENSMUST00000028874 2769 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Ccnt1-208ENSMUST00000169707 7397 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Cd8b1-201ENSMUST00000065248 1483 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Acacb-201ENSMUST00000031583 8482 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Acp5-203ENSMUST00000165735 1376 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Gm42498-201ENSMUST00000199981 1372 ntBASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Batf2-201ENSMUST00000045042 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Alg13-202ENSMUST00000070801 1802 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Cdk2ap1-204ENSMUST00000111474 1286 ntAPPRIS ALT1 TSL 2 BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Pla2g1b-202ENSMUST00000112071 361 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Gm11663-201ENSMUST00000117888 290 ntBASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Gm14724-201ENSMUST00000118400 537 ntBASIC12.1□□□□□ -0.47
Vps28Q9D1C8 5430405H02Rik-202ENSMUST00000176134 1196 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Gm8100-201ENSMUST00000182906 988 ntBASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Gm2965-201ENSMUST00000198365 343 ntBASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Gm4482-201ENSMUST00000200876 742 ntBASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Gm2553-201ENSMUST00000215986 605 ntBASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Nsd1-205ENSMUST00000224693 852 ntBASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Fam25c-201ENSMUST00000052126 408 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Gm10288-201ENSMUST00000084614 537 ntBASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Trim46-202ENSMUST00000090924 2721 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Vps16-201ENSMUST00000028900 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Umod-201ENSMUST00000033263 2625 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Ciz1-204ENSMUST00000113334 2871 ntAPPRIS P3 TSL 5 BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Trpv3-201ENSMUST00000049676 5835 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Lgr5-201ENSMUST00000020350 4714 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Ncoa6-203ENSMUST00000109670 7101 ntAPPRIS P2 TSL 5 BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Ash2l-210ENSMUST00000166078 2234 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Zfp512-208ENSMUST00000202244 3045 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Gm43807-201ENSMUST00000200678 1781 ntBASIC12.1□□□□□ -0.47
Vps28Q9D1C8 AC154517.2-201ENSMUST00000220829 2458 ntBASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Klhdc7b-202ENSMUST00000225666 3951 ntAPPRIS ALT2 BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Plagl1-203ENSMUST00000121766 3897 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Vps28Q9D1C8 Gm42943-201ENSMUST00000199676 3242 ntBASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Steap3-202ENSMUST00000112640 2752 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Cyth3-202ENSMUST00000116456 3738 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Mroh7-201ENSMUST00000106770 4346 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Ly6e-210ENSMUST00000188866 2068 ntAPPRIS P1 TSL 3 BASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Aldoc-202ENSMUST00000102478 1700 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Prr18-202ENSMUST00000163887 3251 ntAPPRIS P1 TSL 3 BASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Hk1-205ENSMUST00000130422 2916 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Nxph1-202ENSMUST00000160300 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Cyp2d34-201ENSMUST00000109515 1622 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Lbh-201ENSMUST00000024857 3064 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Gm24891-201ENSMUST00000104391 136 ntBASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Dmrtc1a-202ENSMUST00000119624 1149 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Gm8566-201ENSMUST00000120174 465 ntBASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Pcbd2-202ENSMUST00000124968 546 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Vps28Q9D1C8 D630008O14Rik-202ENSMUST00000149909 1043 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Gm23085-201ENSMUST00000157849 293 ntBASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Gm27530-201ENSMUST00000184096 98 ntBASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Gm31597-201ENSMUST00000211176 515 ntTSL 2 BASIC12.09□□□□□ -0.47
Vps28Q9D1C8 AC153830.1-201ENSMUST00000218522 594 ntTSL 5 BASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Wdr89-201ENSMUST00000062370 2979 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Vwa7-201ENSMUST00000007245 4313 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Fam49a-201ENSMUST00000069005 1771 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Phykpl-206ENSMUST00000167797 3116 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Ecd-201ENSMUST00000022344 3132 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Mtr-201ENSMUST00000099856 8294 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Adck2-204ENSMUST00000140364 3542 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Luc7l-201ENSMUST00000025023 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Olfr222-203ENSMUST00000215339 2166 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Prkag3-206ENSMUST00000188073 2832 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Vps28Q9D1C8 Gm16364-201ENSMUST00000153722 1313 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 66 ms