Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Mthfd1l-201ENSMUST00000043735 3535 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Sema6d-207ENSMUST00000103240 4372 ntAPPRIS ALT1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Tnfrsf18-203ENSMUST00000122001 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Gm24749-201ENSMUST00000157838 343 ntBASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 S100a14-202ENSMUST00000167598 1059 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Ip6k2-202ENSMUST00000192028 1199 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 AC110091.1-201ENSMUST00000216004 691 ntTSL 3 BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Mia-201ENSMUST00000071986 566 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Olfr605-201ENSMUST00000080660 1011 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Fads1-201ENSMUST00000010807 3456 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Sowahc-201ENSMUST00000182161 4482 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Syt7-202ENSMUST00000076968 6624 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Ttc29-202ENSMUST00000109902 1416 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Tfdp2-205ENSMUST00000179416 2408 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Olfr658-202ENSMUST00000210641 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Olfr658-201ENSMUST00000089296 2912 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Zfp426-202ENSMUST00000115562 3557 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Asap1-203ENSMUST00000110115 4535 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Npy5r-202ENSMUST00000211920 1715 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Pcdhgb5-201ENSMUST00000192535 4670 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Dlk1-201ENSMUST00000056110 4653 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Fosb-203ENSMUST00000207716 3546 ntTSL 5 BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Trim35-201ENSMUST00000022623 3678 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Hyal3-202ENSMUST00000148440 1380 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Adgrl3-214ENSMUST00000120445 5230 ntTSL 5 BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Zmynd8-203ENSMUST00000099084 5232 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Tex45-203ENSMUST00000161680 1526 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Fn1-216ENSMUST00000189821 7410 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Ddx56Q9D0R4 Pcsk7-209ENSMUST00000216672 3599 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Gatb-202ENSMUST00000107672 1820 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Zfp280d-205ENSMUST00000183468 1834 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Rsl1-201ENSMUST00000021997 2591 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Gm20658-201ENSMUST00000175871 1489 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 5330413P13Rik-204ENSMUST00000210606 1464 ntTSL 5 BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Fcrl1-203ENSMUST00000167200 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Tiprl-201ENSMUST00000043235 4380 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 AC124397.2-201ENSMUST00000225575 2215 ntBASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Fcer2a-201ENSMUST00000005678 2242 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Mccc1os-202ENSMUST00000137198 2686 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Gm11596-201ENSMUST00000105058 1079 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Ubxn10-201ENSMUST00000105809 2757 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Smim5-201ENSMUST00000131566 700 ntTSL 2 BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Gm15738-202ENSMUST00000140892 427 ntTSL 2 BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Gm4819-201ENSMUST00000182170 1009 ntBASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Gm27246-201ENSMUST00000183611 1240 ntTSL 5 BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Gm19744-202ENSMUST00000186135 948 ntTSL 5 BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Gm28071-201ENSMUST00000190355 478 ntBASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Gm38314-201ENSMUST00000195709 625 ntBASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Gm18038-201ENSMUST00000197900 485 ntBASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 9230114K14Rik-203ENSMUST00000199547 437 ntTSL 3 BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Ift22-205ENSMUST00000200157 3071 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Trak1-213ENSMUST00000211439 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Gm32468-201ENSMUST00000214199 1040 ntTSL 5 BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Gm9797-202ENSMUST00000218003 294 ntBASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Gm19605-202ENSMUST00000221514 1084 ntTSL 5 BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Pebp4-201ENSMUST00000022678 1079 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Nmnat1-201ENSMUST00000030845 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Ndufaf5-201ENSMUST00000044825 1166 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Fam214a-205ENSMUST00000215370 4205 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Sstr3-201ENSMUST00000053239 3928 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Arhgef9-206ENSMUST00000113884 3784 ntTSL 5 BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Gm26703-201ENSMUST00000181370 2864 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Acacb-201ENSMUST00000031583 8482 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Plod3-201ENSMUST00000004968 3280 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Mindy1-202ENSMUST00000107187 2827 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Npr2-201ENSMUST00000030191 3660 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Trpm1-221ENSMUST00000206706 2350 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Acsm1-201ENSMUST00000047929 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Ebf2-202ENSMUST00000176029 2784 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Lingo4-201ENSMUST00000050975 3645 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Vrk1-204ENSMUST00000220629 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Lrp8-203ENSMUST00000106732 2648 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Ddx56Q9D0R4 Taf6-202ENSMUST00000110936 2308 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx56Q9D0R4 Eng-202ENSMUST00000113272 3021 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx56Q9D0R4 Hk3-203ENSMUST00000126234 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx56Q9D0R4 Extl3-201ENSMUST00000022550 5977 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Ddx56Q9D0R4 Fndc8-201ENSMUST00000018988 2166 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx56Q9D0R4 Gm5525-201ENSMUST00000190438 1312 ntBASIC12.4□□□□□ -0.42
Ddx56Q9D0R4 Spatc1l-201ENSMUST00000009259 1332 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx56Q9D0R4 Nmrk1-203ENSMUST00000159572 1706 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx56Q9D0R4 Ptprh-202ENSMUST00000166650 3642 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Ddx56Q9D0R4 Rnf6-201ENSMUST00000067837 2388 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx56Q9D0R4 Fnip1-201ENSMUST00000046835 6255 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx56Q9D0R4 Lipo2-201ENSMUST00000147153 3562 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Ddx56Q9D0R4 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Ddx56Q9D0R4 Gm23949-201ENSMUST00000104027 127 ntBASIC12.4□□□□□ -0.42
Ddx56Q9D0R4 Gm11509-201ENSMUST00000117358 325 ntBASIC12.4□□□□□ -0.42
Ddx56Q9D0R4 Gm454-201ENSMUST00000160126 751 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 31.5 ms