Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Mmel1-207ENSMUST00000163732 2935 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Smc1aQ9CU62 Tom1l2-202ENSMUST00000093046 4849 ntTSL 5 BASIC13.25□□□□□ -0.29
Smc1aQ9CU62 Arvcf-202ENSMUST00000115610 3829 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
Smc1aQ9CU62 Tnip1-202ENSMUST00000102730 2787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Smc1aQ9CU62 Mlc1-201ENSMUST00000042594 2783 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Smc1aQ9CU62 Abo-202ENSMUST00000114045 1811 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
Smc1aQ9CU62 Chrdl1-204ENSMUST00000166406 2605 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
Smc1aQ9CU62 Cryz-208ENSMUST00000192462 2505 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Astn1-209ENSMUST00000194369 3344 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Smc1aQ9CU62 AC130671.2-201ENSMUST00000227224 1621 ntBASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Phykpl-206ENSMUST00000167797 3116 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Prkag3-201ENSMUST00000081636 2341 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Esrp1-201ENSMUST00000043781 3743 ntTSL 5 BASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Gm5884-201ENSMUST00000036712 1479 ntBASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Ambra1-203ENSMUST00000099712 5021 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Matn2-202ENSMUST00000163455 3577 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Prmt2-203ENSMUST00000099572 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Frmd3-201ENSMUST00000084474 4136 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Cog4-201ENSMUST00000034203 2737 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Tut1-201ENSMUST00000096239 2747 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Arhgap4-201ENSMUST00000064376 3353 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Lgi4-201ENSMUST00000039775 4037 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Stat3-202ENSMUST00000103114 6042 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Meaf6-205ENSMUST00000154689 4550 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Gm18262-201ENSMUST00000222560 1946 ntBASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Gm12616-201ENSMUST00000118594 382 ntBASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Gm12624-201ENSMUST00000177615 382 ntBASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Gm12621-201ENSMUST00000177760 382 ntBASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Gm12615-201ENSMUST00000177970 382 ntBASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Gm12622-201ENSMUST00000177975 382 ntBASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Gm12627-201ENSMUST00000178412 382 ntBASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Gm12625-201ENSMUST00000179122 382 ntBASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Gm12614-201ENSMUST00000179586 382 ntBASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Gm12613-201ENSMUST00000180323 382 ntBASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Gm27552-201ENSMUST00000183351 62 ntBASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Gm27844-201ENSMUST00000183613 62 ntBASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Gm28172-201ENSMUST00000189880 506 ntTSL 3 BASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Gm44136-201ENSMUST00000203819 1106 ntBASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Gm44100-201ENSMUST00000204329 436 ntBASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Gm45598-202ENSMUST00000210719 986 ntBASIC13.24□□□□□ -0.29
Smc1aQ9CU62 AC107638.1-201ENSMUST00000213690 1061 ntBASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Krtap5-1-201ENSMUST00000084413 588 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Rims4-201ENSMUST00000044734 4962 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Gm13093-201ENSMUST00000126212 2485 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Pde4c-207ENSMUST00000224874 3099 ntAPPRIS ALT2 BASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Pmp22-204ENSMUST00000108702 1822 ntAPPRIS P1 TSL 3 BASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Gm43823-201ENSMUST00000197391 1808 ntBASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Plekhm1-201ENSMUST00000041272 5968 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Atl3-202ENSMUST00000170373 6474 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Tmcc2-203ENSMUST00000132435 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Zfp398-201ENSMUST00000079881 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Edc4-202ENSMUST00000119261 4645 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Spr-ps1-203ENSMUST00000187705 2892 ntBASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Ndc1-204ENSMUST00000139560 4584 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Lrfn5-201ENSMUST00000055815 4410 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Smc1aQ9CU62 AC122197.2-201ENSMUST00000219196 1635 ntBASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Klhl22-208ENSMUST00000165790 2616 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Pip5k1a-206ENSMUST00000107236 3618 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Il22ra1-201ENSMUST00000102546 2569 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Pabpc4-203ENSMUST00000106241 3050 ntAPPRIS P5 TSL 5 BASIC13.24□□□□□ -0.29
Smc1aQ9CU62 Ncoa6-203ENSMUST00000109670 7101 ntAPPRIS P2 TSL 5 BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Gm43622-201ENSMUST00000200140 2019 ntBASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Zfp568-201ENSMUST00000074322 2016 ntAPPRIS P3 TSL 5 BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Limk2-201ENSMUST00000101638 3514 ntAPPRIS P4 TSL 1 (best) BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Gm26615-201ENSMUST00000181522 3201 ntTSL 2 BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Fam170a-201ENSMUST00000039121 1342 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Hdac7-201ENSMUST00000079838 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Myo18a-205ENSMUST00000100794 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Dtx3l-202ENSMUST00000114885 2648 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Cpa5-201ENSMUST00000062758 2187 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 4931428F04Rik-201ENSMUST00000014981 3492 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Gpr17-201ENSMUST00000064016 5195 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Trmt61b-202ENSMUST00000137830 2572 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Gm13124-201ENSMUST00000105748 1221 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Gm11568-201ENSMUST00000107434 1145 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Cd27-203ENSMUST00000112282 588 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Cspp1-202ENSMUST00000117415 1272 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Mageb17-ps-201ENSMUST00000117902 919 ntBASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Gm13461-201ENSMUST00000120980 662 ntBASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Pabpc1l2a-ps-201ENSMUST00000128361 513 ntBASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Sncb-202ENSMUST00000134110 722 ntAPPRIS P1 TSL 3 BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Gm14235-201ENSMUST00000142445 366 ntTSL 3 BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Gm12714-201ENSMUST00000143391 669 ntTSL 3 BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Rps28-202ENSMUST00000166693 271 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Spint5-202ENSMUST00000180193 443 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Ip6k2-204ENSMUST00000192307 1191 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Ighv1-60-201ENSMUST00000195816 405 ntBASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Polr2i-201ENSMUST00000019882 819 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Vdac1-201ENSMUST00000020673 891 ntTSL 5 BASIC13.23□□□□□ -0.29
Smc1aQ9CU62 Gm19187-201ENSMUST00000206781 892 ntBASIC13.23□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms