Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ccdc9Q8VC31 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Ccdc9Q8VC31 Gm10339-203ENSMUST00000225409 1671 ntBASIC14.18□□□□□ -0.14
Ccdc9Q8VC31 Polh-201ENSMUST00000024749 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ccdc9Q8VC31 Ltbp1-203ENSMUST00000112516 5140 ntAPPRIS P3 TSL 5 BASIC14.18□□□□□ -0.14
Ccdc9Q8VC31 C530005A16Rik-201ENSMUST00000142815 2436 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ccdc9Q8VC31 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ccdc9Q8VC31 Gm12485-201ENSMUST00000119641 291 ntBASIC14.18□□□□□ -0.14
Ccdc9Q8VC31 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC14.18□□□□□ -0.14
Ccdc9Q8VC31 Acat3-202ENSMUST00000160378 987 ntTSL 5 BASIC14.18□□□□□ -0.14
Ccdc9Q8VC31 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ccdc9Q8VC31 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC14.18□□□□□ -0.14
Ccdc9Q8VC31 Gm43002-201ENSMUST00000200310 155 ntBASIC14.18□□□□□ -0.14
Ccdc9Q8VC31 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ccdc9Q8VC31 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Ccdc9Q8VC31 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC14.18□□□□□ -0.14
Ccdc9Q8VC31 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC14.18□□□□□ -0.14
Ccdc9Q8VC31 Tbl3-202ENSMUST00000126319 5226 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ccdc9Q8VC31 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC14.18□□□□□ -0.14
Ccdc9Q8VC31 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ccdc9Q8VC31 Larp7-201ENSMUST00000029588 2121 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Ccdc9Q8VC31 Smok3a-201ENSMUST00000085886 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ccdc9Q8VC31 Plekha7-201ENSMUST00000084664 4312 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ccdc9Q8VC31 2210406O10Rik-202ENSMUST00000122882 1743 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ccdc9Q8VC31 Olfr707-205ENSMUST00000214112 1735 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Ccdc9Q8VC31 Brat1-201ENSMUST00000041588 3333 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ccdc9Q8VC31 Mgat5-201ENSMUST00000038361 8436 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ccdc9Q8VC31 Gm15958-202ENSMUST00000153479 2087 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ccdc9Q8VC31 Ints6l-201ENSMUST00000039374 3766 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ccdc9Q8VC31 Capn15-201ENSMUST00000041641 3520 ntAPPRIS P3 TSL 5 BASIC14.18□□□□□ -0.14
Ccdc9Q8VC31 Med17-201ENSMUST00000034411 3964 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ccdc9Q8VC31 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Ccdc9Q8VC31 Pml-202ENSMUST00000114136 4343 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ccdc9Q8VC31 Atxn7l1-204ENSMUST00000125192 2644 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Ccdc9Q8VC31 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC14.17□□□□□ -0.14
Ccdc9Q8VC31 Wdr92-201ENSMUST00000046955 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ccdc9Q8VC31 Tceal8-204ENSMUST00000163584 2358 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
Ccdc9Q8VC31 Sgca-205ENSMUST00000166320 1428 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ccdc9Q8VC31 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Ccdc9Q8VC31 Zfyve1-201ENSMUST00000048319 4036 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ccdc9Q8VC31 Pik3r5-201ENSMUST00000021283 4370 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ccdc9Q8VC31 Gpr35-202ENSMUST00000064480 3409 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ccdc9Q8VC31 Atg2a-201ENSMUST00000045351 6371 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ccdc9Q8VC31 Fam47e-202ENSMUST00000131166 1500 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Ccdc9Q8VC31 Pla2g6-203ENSMUST00000172403 2943 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Ccdc9Q8VC31 Dusp16-202ENSMUST00000129433 3993 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ccdc9Q8VC31 Ldha-ps-201ENSMUST00000119390 995 ntBASIC14.17□□□□□ -0.14
Ccdc9Q8VC31 Gm12036-201ENSMUST00000120008 530 ntBASIC14.17□□□□□ -0.14
Ccdc9Q8VC31 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC14.17□□□□□ -0.14
Ccdc9Q8VC31 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Ccdc9Q8VC31 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Ccdc9Q8VC31 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Ccdc9Q8VC31 Gm26464-201ENSMUST00000157094 305 ntBASIC14.17□□□□□ -0.14
Ccdc9Q8VC31 Gm28631-201ENSMUST00000190740 334 ntBASIC14.17□□□□□ -0.14
Ccdc9Q8VC31 Gm38144-201ENSMUST00000192790 465 ntBASIC14.17□□□□□ -0.14
Ccdc9Q8VC31 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC14.17□□□□□ -0.14
Ccdc9Q8VC31 Gm44855-201ENSMUST00000205725 362 ntBASIC14.17□□□□□ -0.14
Ccdc9Q8VC31 Slc13a5-205ENSMUST00000208056 3111 ntTSL 5 BASIC14.17□□□□□ -0.14
Ccdc9Q8VC31 1600014C10Rik-201ENSMUST00000067854 3143 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Ccdc9Q8VC31 D630003M21Rik-201ENSMUST00000046944 3910 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ccdc9Q8VC31 Ctnnd1-223ENSMUST00000111697 5294 ntTSL 5 BASIC14.17□□□□□ -0.14
Ccdc9Q8VC31 Ldb3-207ENSMUST00000227819 1499 ntBASIC14.17□□□□□ -0.14
Ccdc9Q8VC31 Zfp710-203ENSMUST00000166250 3606 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ccdc9Q8VC31 Mest-210ENSMUST00000157040 2383 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ccdc9Q8VC31 Carhsp1-201ENSMUST00000008537 2849 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ccdc9Q8VC31 Nos1-206ENSMUST00000142742 10123 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
Ccdc9Q8VC31 Ces2h-201ENSMUST00000172032 2445 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Gcc1-202ENSMUST00000090511 4650 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Slc35a4-206ENSMUST00000186538 2842 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Gfra2-201ENSMUST00000022699 3472 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Odf2-207ENSMUST00000113762 2353 ntTSL 5 BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Ablim1-212ENSMUST00000111558 3123 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Cln3-204ENSMUST00000116269 2487 ntAPPRIS P2 TSL 5 BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Slitrk1-201ENSMUST00000100322 5359 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Gm7488-201ENSMUST00000117148 684 ntBASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Ap1g1-206ENSMUST00000179104 1096 ntBASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Gm26574-201ENSMUST00000181876 2141 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 6030458C11Rik-204ENSMUST00000228177 3156 ntBASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Haus7-201ENSMUST00000033737 1380 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Gm17980-201ENSMUST00000217977 2349 ntBASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Zbtb40-201ENSMUST00000049583 7192 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Pcp4l1-201ENSMUST00000111332 1577 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Dph6-203ENSMUST00000102542 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Myh1-203ENSMUST00000124516 6081 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Ap1b1-201ENSMUST00000009234 4085 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Avil-203ENSMUST00000129173 2925 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Prpf40b-202ENSMUST00000118287 3129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 63.7 ms