Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Cmklr1-201ENSMUST00000047936 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Usp47Q8BY87 Lpar2-202ENSMUST00000164890 5800 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Usp47Q8BY87 AU015791-201ENSMUST00000223443 1457 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Usp47Q8BY87 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC16.58■□□□□ 0.24
Usp47Q8BY87 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Usp47Q8BY87 Hmgcs2-202ENSMUST00000120541 2524 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Usp47Q8BY87 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Usp47Q8BY87 AC122018.1-201ENSMUST00000217769 1686 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Usp47Q8BY87 Aldoart2-201ENSMUST00000080123 1658 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Usp47Q8BY87 Olfr1419-202ENSMUST00000213954 2918 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
Usp47Q8BY87 Fcrl1-203ENSMUST00000167200 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Usp47Q8BY87 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Usp47Q8BY87 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Usp47Q8BY87 Egr1-202ENSMUST00000165033 3036 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
Usp47Q8BY87 Gm14460-201ENSMUST00000121511 639 ntBASIC16.57■□□□□ 0.24
Usp47Q8BY87 Gm13073-201ENSMUST00000134059 486 ntTSL 3 BASIC16.57■□□□□ 0.24
Usp47Q8BY87 Gm7030-202ENSMUST00000172968 899 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
Usp47Q8BY87 Trav13d-3-201ENSMUST00000179512 391 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Usp47Q8BY87 Trav13n-3-201ENSMUST00000179580 337 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Usp47Q8BY87 1700008K24Rik-201ENSMUST00000185974 833 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Usp47Q8BY87 Gm3551-201ENSMUST00000190750 664 ntBASIC16.57■□□□□ 0.24
Usp47Q8BY87 Gpx1-204ENSMUST00000193987 653 ntTSL 3 BASIC16.57■□□□□ 0.24
Usp47Q8BY87 Pgpep1l-202ENSMUST00000207874 677 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
Usp47Q8BY87 9530020I12Rik-203ENSMUST00000219371 819 ntTSL 3 BASIC16.57■□□□□ 0.24
Usp47Q8BY87 Gm29676-202ENSMUST00000222409 364 ntTSL 2 BASIC16.57■□□□□ 0.24
Usp47Q8BY87 Cd7-201ENSMUST00000026159 982 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Usp47Q8BY87 Krtap19-5-201ENSMUST00000053460 483 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Usp47Q8BY87 Rnf183-201ENSMUST00000079420 573 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Usp47Q8BY87 Kalrn-211ENSMUST00000114966 3857 ntTSL 5 BASIC16.57■□□□□ 0.24
Usp47Q8BY87 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Usp47Q8BY87 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Usp47Q8BY87 Gm45743-201ENSMUST00000212701 2795 ntBASIC16.57■□□□□ 0.24
Usp47Q8BY87 Lrrc74b-202ENSMUST00000065125 1539 ntTSL 2 BASIC16.57■□□□□ 0.24
Usp47Q8BY87 Pisd-203ENSMUST00000120591 2491 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
Usp47Q8BY87 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Usp47Q8BY87 Wapl-202ENSMUST00000090027 4185 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
Usp47Q8BY87 Abi2-205ENSMUST00000187709 1671 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
Usp47Q8BY87 Gm21358-201ENSMUST00000191645 1659 ntBASIC16.57■□□□□ 0.24
Usp47Q8BY87 Gm12198-201ENSMUST00000154068 1809 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Usp47Q8BY87 Ebf3-203ENSMUST00000168203 3724 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Usp47Q8BY87 Stau1-201ENSMUST00000049412 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Usp47Q8BY87 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Usp47Q8BY87 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Usp47Q8BY87 6030458C11Rik-204ENSMUST00000228177 3156 ntBASIC16.56■□□□□ 0.24
Usp47Q8BY87 Pnpla6-211ENSMUST00000207941 4263 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Usp47Q8BY87 Ptger4-202ENSMUST00000120563 3312 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Usp47Q8BY87 Ikbkg-205ENSMUST00000114129 2222 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Usp47Q8BY87 Cln3-201ENSMUST00000032962 2386 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Usp47Q8BY87 Ttc30a2-201ENSMUST00000099995 2431 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
Usp47Q8BY87 Gm2238-201ENSMUST00000192074 3669 ntBASIC16.56■□□□□ 0.24
Usp47Q8BY87 Gm43830-201ENSMUST00000198760 1067 ntBASIC16.56■□□□□ 0.24
Usp47Q8BY87 Gm43852-201ENSMUST00000202098 917 ntBASIC16.56■□□□□ 0.24
Usp47Q8BY87 Gm44315-201ENSMUST00000203041 219 ntBASIC16.56■□□□□ 0.24
Usp47Q8BY87 Folr2-203ENSMUST00000210598 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Usp47Q8BY87 Ddo-207ENSMUST00000216830 806 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Usp47Q8BY87 Uqcc1-201ENSMUST00000006036 808 ntTSL 5 BASIC16.56■□□□□ 0.24
Usp47Q8BY87 Gm10775-201ENSMUST00000099425 1203 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Usp47Q8BY87 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC16.56■□□□□ 0.24
Usp47Q8BY87 Spryd7-201ENSMUST00000022497 4002 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Usp47Q8BY87 Rps6kl1-202ENSMUST00000221972 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Usp47Q8BY87 Prkcg-201ENSMUST00000100301 3127 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Usp47Q8BY87 9330199G10Rik-202ENSMUST00000221607 1728 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Usp47Q8BY87 Nfe2l1-210ENSMUST00000167110 3547 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
Usp47Q8BY87 Col15a1-203ENSMUST00000107730 1755 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Usp47Q8BY87 Slc35b3-202ENSMUST00000167513 1778 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Usp47Q8BY87 Syt15-202ENSMUST00000119693 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Usp47Q8BY87 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Usp47Q8BY87 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Usp47Q8BY87 Txndc5-204ENSMUST00000162075 2619 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Usp47Q8BY87 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Usp47Q8BY87 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Usp47Q8BY87 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Usp47Q8BY87 Map7d2-202ENSMUST00000112470 1350 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Usp47Q8BY87 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Usp47Q8BY87 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Usp47Q8BY87 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Usp47Q8BY87 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Usp47Q8BY87 Gm15972-201ENSMUST00000132571 418 ntTSL 2 BASIC16.55■□□□□ 0.24
Usp47Q8BY87 Gm13990-201ENSMUST00000151391 2701 ntTSL 5 BASIC16.55■□□□□ 0.24
Usp47Q8BY87 Prss36-208ENSMUST00000156152 1132 ntTSL 5 BASIC16.55■□□□□ 0.24
Usp47Q8BY87 Nxph1-202ENSMUST00000160300 2815 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Usp47Q8BY87 Nrf1-219ENSMUST00000167972 1541 ntTSL 5 BASIC16.55■□□□□ 0.24
Usp47Q8BY87 Nrxn1-215ENSMUST00000173917 1439 ntTSL 2 BASIC16.55■□□□□ 0.24
Usp47Q8BY87 Gm42817-201ENSMUST00000198962 607 ntTSL 3 BASIC16.55■□□□□ 0.24
Usp47Q8BY87 3110031N09Rik-201ENSMUST00000201115 326 ntBASIC16.55■□□□□ 0.24
Usp47Q8BY87 Gm44190-201ENSMUST00000205083 1401 ntBASIC16.55■□□□□ 0.24
Usp47Q8BY87 Gm34821-201ENSMUST00000208399 1031 ntTSL 5 BASIC16.55■□□□□ 0.24
Usp47Q8BY87 Gm45550-201ENSMUST00000209380 946 ntBASIC16.55■□□□□ 0.24
Usp47Q8BY87 Slc6a4-201ENSMUST00000021195 2725 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Usp47Q8BY87 Ccdc153-202ENSMUST00000213891 792 ntAPPRIS ALT2 TSL 3 BASIC16.55■□□□□ 0.24
Usp47Q8BY87 CT573047.1-201ENSMUST00000223652 851 ntBASIC16.55■□□□□ 0.24
Usp47Q8BY87 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
Usp47Q8BY87 AC169511.2-201ENSMUST00000226674 2063 ntBASIC16.55■□□□□ 0.24
Usp47Q8BY87 Hkdc1-201ENSMUST00000020277 3517 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Usp47Q8BY87 Gm37600-201ENSMUST00000193764 3292 ntBASIC16.55■□□□□ 0.24
Usp47Q8BY87 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Usp47Q8BY87 Bcl11a-201ENSMUST00000000881 3061 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Usp47Q8BY87 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Usp47Q8BY87 Ablim1-210ENSMUST00000111550 2731 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Usp47Q8BY87 Ankzf1-208ENSMUST00000152233 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms