Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim56Q80VI1 Gm6903-201ENSMUST00000160509 1366 ntBASIC13.89□□□□□ -0.19
Trim56Q80VI1 Tmem116-209ENSMUST00000156080 1184 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim56Q80VI1 Gm20535-201ENSMUST00000173157 1268 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Trim56Q80VI1 Gm18367-201ENSMUST00000176139 600 ntBASIC13.89□□□□□ -0.19
Trim56Q80VI1 Gm26838-201ENSMUST00000180485 911 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Trim56Q80VI1 Vmn1r205-201ENSMUST00000185475 951 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
Trim56Q80VI1 Abhd4-208ENSMUST00000199338 868 ntTSL 3 BASIC13.89□□□□□ -0.19
Trim56Q80VI1 Cplx3-203ENSMUST00000217015 540 ntTSL 2 BASIC13.89□□□□□ -0.19
Trim56Q80VI1 Cct2-206ENSMUST00000219573 637 ntTSL 3 BASIC13.89□□□□□ -0.19
Trim56Q80VI1 Tas2r126-201ENSMUST00000059534 930 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
Trim56Q80VI1 Amtn-201ENSMUST00000073363 1022 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim56Q80VI1 H3f3a-201ENSMUST00000081026 888 ntAPPRIS ALT1 TSL 5 BASIC13.89□□□□□ -0.19
Trim56Q80VI1 Zfp335-201ENSMUST00000041361 4587 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim56Q80VI1 Snai2-201ENSMUST00000023356 2031 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim56Q80VI1 Xpc-201ENSMUST00000032182 3634 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim56Q80VI1 Lsp1-211ENSMUST00000149521 1910 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Trim56Q80VI1 Kcna10-201ENSMUST00000055064 1913 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim56Q80VI1 Trim35-201ENSMUST00000022623 3678 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim56Q80VI1 Iws1-201ENSMUST00000025243 9613 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim56Q80VI1 Fam214a-205ENSMUST00000215370 4205 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Trim56Q80VI1 Sik2-205ENSMUST00000176663 4107 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Trim56Q80VI1 Gm45199-201ENSMUST00000207640 1507 ntBASIC13.89□□□□□ -0.19
Trim56Q80VI1 Zfp341-201ENSMUST00000081926 3299 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Trim56Q80VI1 Cd33-202ENSMUST00000039861 1791 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim56Q80VI1 Anxa4-202ENSMUST00000113675 2030 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim56Q80VI1 Camsap3-209ENSMUST00000207970 3817 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim56Q80VI1 Syt15-202ENSMUST00000119693 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim56Q80VI1 Chit1-202ENSMUST00000159963 1815 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim56Q80VI1 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC13.88□□□□□ -0.19
Trim56Q80VI1 Tmem230-203ENSMUST00000110164 2957 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
Trim56Q80VI1 Fbxl22-201ENSMUST00000056890 3935 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim56Q80VI1 Srek1-201ENSMUST00000074616 3934 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
Trim56Q80VI1 Rad54l-202ENSMUST00000102705 2780 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim56Q80VI1 Brd3-210ENSMUST00000164296 2791 ntAPPRIS P3 TSL 5 BASIC13.88□□□□□ -0.19
Trim56Q80VI1 Gsg1-202ENSMUST00000111909 1087 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
Trim56Q80VI1 Pla2g1b-202ENSMUST00000112071 361 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Trim56Q80VI1 Clps-202ENSMUST00000114785 369 ntTSL 2 BASIC13.88□□□□□ -0.19
Trim56Q80VI1 Gm22711-201ENSMUST00000116890 133 ntBASIC13.88□□□□□ -0.19
Trim56Q80VI1 Gm24844-201ENSMUST00000158679 127 ntBASIC13.88□□□□□ -0.19
Trim56Q80VI1 Anapc16-202ENSMUST00000182116 581 ntTSL 3 BASIC13.88□□□□□ -0.19
Trim56Q80VI1 Ak6-205ENSMUST00000190729 1184 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Trim56Q80VI1 Gm37695-201ENSMUST00000191765 530 ntTSL 5 BASIC13.88□□□□□ -0.19
Trim56Q80VI1 4833445I07Rik-202ENSMUST00000194104 579 ntTSL 3 BASIC13.88□□□□□ -0.19
Trim56Q80VI1 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Trim56Q80VI1 Olfr707-202ENSMUST00000208759 1242 ntAPPRIS P1 TSL 3 BASIC13.88□□□□□ -0.19
Trim56Q80VI1 Fam151b-201ENSMUST00000040106 1152 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim56Q80VI1 Aamdc-202ENSMUST00000072725 776 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Trim56Q80VI1 Dnajb6-203ENSMUST00000114839 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim56Q80VI1 Irak2-201ENSMUST00000059286 3196 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim56Q80VI1 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim56Q80VI1 Slc14a2-202ENSMUST00000163367 1428 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Trim56Q80VI1 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim56Q80VI1 Cep41-203ENSMUST00000115131 2256 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
Trim56Q80VI1 Traf3ip2-201ENSMUST00000019987 2867 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim56Q80VI1 Cryz-208ENSMUST00000192462 2505 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim56Q80VI1 Tcn2-203ENSMUST00000109989 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Trim56Q80VI1 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
Trim56Q80VI1 Prdx2-202ENSMUST00000109733 1590 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
Trim56Q80VI1 Ttc30a2-201ENSMUST00000099995 2431 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
Trim56Q80VI1 Plcd1-201ENSMUST00000010804 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trim56Q80VI1 Plekhg2-202ENSMUST00000119990 4880 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trim56Q80VI1 Gid8-202ENSMUST00000078687 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trim56Q80VI1 Art2b-202ENSMUST00000209526 2819 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
Trim56Q80VI1 Cbx7-203ENSMUST00000109616 2899 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Trim56Q80VI1 Gipr-201ENSMUST00000094790 2856 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
Trim56Q80VI1 4930520O04Rik-202ENSMUST00000131898 2660 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Trim56Q80VI1 Gm15432-201ENSMUST00000121106 195 ntBASIC13.87□□□□□ -0.19
Trim56Q80VI1 Zfp629-204ENSMUST00000128731 823 ntTSL 3 BASIC13.87□□□□□ -0.19
Trim56Q80VI1 Gm13115-201ENSMUST00000156438 620 ntTSL 5 BASIC13.87□□□□□ -0.19
Trim56Q80VI1 Gm22144-201ENSMUST00000157402 102 ntBASIC13.87□□□□□ -0.19
Trim56Q80VI1 Gm17231-202ENSMUST00000165858 663 ntTSL 5 BASIC13.87□□□□□ -0.19
Trim56Q80VI1 1110002L01Rik-203ENSMUST00000179637 586 ntTSL 5 BASIC13.87□□□□□ -0.19
Trim56Q80VI1 Gm19744-202ENSMUST00000186135 948 ntTSL 5 BASIC13.87□□□□□ -0.19
Trim56Q80VI1 Gm28516-201ENSMUST00000190257 663 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Trim56Q80VI1 1700030I03Rik-201ENSMUST00000192978 942 ntBASIC13.87□□□□□ -0.19
Trim56Q80VI1 Ighv6-7-201ENSMUST00000193397 357 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
Trim56Q80VI1 Gm21221-201ENSMUST00000202876 1073 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Trim56Q80VI1 Gm13522-202ENSMUST00000209682 997 ntTSL 5 BASIC13.87□□□□□ -0.19
Trim56Q80VI1 Rps12-208ENSMUST00000220070 494 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trim56Q80VI1 1500015O10Rik-201ENSMUST00000027217 902 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trim56Q80VI1 Rpp38-201ENSMUST00000062672 1042 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trim56Q80VI1 Hist1h1b-201ENSMUST00000080511 743 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
Trim56Q80VI1 Cog4-201ENSMUST00000034203 2737 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trim56Q80VI1 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
Trim56Q80VI1 Araf-203ENSMUST00000122312 2854 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Trim56Q80VI1 Cd55b-201ENSMUST00000112488 1325 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trim56Q80VI1 Zp3-201ENSMUST00000005073 1323 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trim56Q80VI1 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trim56Q80VI1 Zfp94-201ENSMUST00000032673 2529 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
Trim56Q80VI1 Hhipl2-201ENSMUST00000065900 2525 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
Trim56Q80VI1 Rubie-203ENSMUST00000227803 2430 ntBASIC13.86□□□□□ -0.19
Trim56Q80VI1 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Fzd6-201ENSMUST00000022906 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Zfp853-203ENSMUST00000212715 3133 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Camk2d-216ENSMUST00000163226 4204 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Chtop-201ENSMUST00000001043 3257 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Vmn1r45-206ENSMUST00000227977 3297 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
Trim56Q80VI1 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 36.2 ms