Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Cbx1-202ENSMUST00000079702 912 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Limch1Q3UH68 Snx33-201ENSMUST00000050916 4571 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Limch1Q3UH68 Ncoa3-202ENSMUST00000109252 5757 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
Limch1Q3UH68 Matn2-202ENSMUST00000163455 3577 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
Limch1Q3UH68 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Limch1Q3UH68 Fbxo18-201ENSMUST00000071564 3567 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Limch1Q3UH68 Nrap-203ENSMUST00000095947 5214 ntTSL 5 BASIC13.91□□□□□ -0.18
Limch1Q3UH68 Mtmr4-201ENSMUST00000092802 5525 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Limch1Q3UH68 Brap-202ENSMUST00000111765 3861 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Limch1Q3UH68 Tfr2-208ENSMUST00000199054 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Limch1Q3UH68 Plscr1-201ENSMUST00000093801 2302 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Limch1Q3UH68 Aldh4a1-201ENSMUST00000039818 3382 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Limch1Q3UH68 Paupar-201ENSMUST00000194826 3482 ntBASIC13.91□□□□□ -0.18
Limch1Q3UH68 Tgm2-201ENSMUST00000103122 3596 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Limch1Q3UH68 Trit1-201ENSMUST00000102649 2074 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Limch1Q3UH68 Onecut1-201ENSMUST00000056006 3957 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Limch1Q3UH68 4931415C17Rik-202ENSMUST00000131064 2255 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Limch1Q3UH68 Galnt9-202ENSMUST00000165856 1541 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Limch1Q3UH68 Ddx17-201ENSMUST00000054014 4761 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Limch1Q3UH68 Arhgef9-206ENSMUST00000113884 3784 ntTSL 5 BASIC13.9□□□□□ -0.18
Limch1Q3UH68 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC13.9□□□□□ -0.18
Limch1Q3UH68 Crem-233ENSMUST00000154135 2530 ntTSL 5 BASIC13.9□□□□□ -0.18
Limch1Q3UH68 Zfp112-204ENSMUST00000215113 2628 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
Limch1Q3UH68 Cacna1g-205ENSMUST00000107786 7984 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Limch1Q3UH68 Tmeff2-202ENSMUST00000114565 2718 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Limch1Q3UH68 Sin3a-206ENSMUST00000168177 5086 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Limch1Q3UH68 Eps15l1-201ENSMUST00000163643 3129 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Limch1Q3UH68 Gm23949-201ENSMUST00000104027 127 ntBASIC13.9□□□□□ -0.18
Limch1Q3UH68 Snx29-202ENSMUST00000115814 1125 ntTSL 5 BASIC13.9□□□□□ -0.18
Limch1Q3UH68 Gm3508-201ENSMUST00000186012 792 ntBASIC13.9□□□□□ -0.18
Limch1Q3UH68 Gm33222-201ENSMUST00000193725 654 ntTSL 3 BASIC13.9□□□□□ -0.18
Limch1Q3UH68 Gm18393-201ENSMUST00000208349 1131 ntBASIC13.9□□□□□ -0.18
Limch1Q3UH68 Gm45609-206ENSMUST00000210176 1023 ntTSL 5 BASIC13.9□□□□□ -0.18
Limch1Q3UH68 Gm4657-201ENSMUST00000213839 787 ntTSL 3 BASIC13.9□□□□□ -0.18
Limch1Q3UH68 Gm9826-201ENSMUST00000029124 1299 ntBASIC13.9□□□□□ -0.18
Limch1Q3UH68 Srfbp1-201ENSMUST00000025406 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Limch1Q3UH68 Pappa-201ENSMUST00000084501 11027 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Limch1Q3UH68 Tom1l2-202ENSMUST00000093046 4849 ntTSL 5 BASIC13.9□□□□□ -0.18
Limch1Q3UH68 Luc7l-201ENSMUST00000025023 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Limch1Q3UH68 Mcf2l-203ENSMUST00000110866 5108 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Limch1Q3UH68 AC129931.1-201ENSMUST00000228865 1861 ntBASIC13.9□□□□□ -0.18
Limch1Q3UH68 Myoc-201ENSMUST00000028020 2074 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Limch1Q3UH68 Acsm1-201ENSMUST00000047929 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Limch1Q3UH68 Slc35a4-202ENSMUST00000050476 2362 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Limch1Q3UH68 4931406C07Rik-202ENSMUST00000178977 2650 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Limch1Q3UH68 Emp1-202ENSMUST00000111907 2763 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Limch1Q3UH68 Cdc25a-204ENSMUST00000198308 2880 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Limch1Q3UH68 Xkr5-201ENSMUST00000055503 3176 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Limch1Q3UH68 Prkar1a-201ENSMUST00000049527 3359 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Limch1Q3UH68 Shtn1-201ENSMUST00000047511 4081 ntAPPRIS P4 TSL 1 (best) BASIC13.9□□□□□ -0.18
Limch1Q3UH68 Cald1-205ENSMUST00000115027 4777 ntTSL 5 BASIC13.9□□□□□ -0.18
Limch1Q3UH68 Pcdhga11-201ENSMUST00000061279 4756 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Limch1Q3UH68 Fbxl22-201ENSMUST00000056890 3935 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Limch1Q3UH68 Adgrg5-201ENSMUST00000074570 2802 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Limch1Q3UH68 Morf4l2-204ENSMUST00000113097 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Limch1Q3UH68 Krba1-202ENSMUST00000077093 8380 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Limch1Q3UH68 6030458C11Rik-204ENSMUST00000228177 3156 ntBASIC13.89□□□□□ -0.19
Limch1Q3UH68 Rbm10-202ENSMUST00000082089 2562 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Limch1Q3UH68 Pcif1-201ENSMUST00000041643 5772 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Limch1Q3UH68 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Limch1Q3UH68 Slc22a4-201ENSMUST00000020586 2263 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Limch1Q3UH68 Grpel1-201ENSMUST00000031099 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Limch1Q3UH68 Kank4-201ENSMUST00000102790 4795 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Limch1Q3UH68 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
Limch1Q3UH68 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC13.89□□□□□ -0.19
Limch1Q3UH68 Tpm1-201ENSMUST00000030185 1797 ntAPPRIS ALT1 TSL 2 BASIC13.89□□□□□ -0.19
Limch1Q3UH68 Gfap-201ENSMUST00000067444 2648 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Limch1Q3UH68 Dcaf11-203ENSMUST00000117701 2311 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Limch1Q3UH68 AC126257.2-201ENSMUST00000215507 2300 ntBASIC13.89□□□□□ -0.19
Limch1Q3UH68 Txndc12-201ENSMUST00000030296 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Limch1Q3UH68 Prdx1-202ENSMUST00000106470 877 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
Limch1Q3UH68 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC13.89□□□□□ -0.19
Limch1Q3UH68 Bcas3os2-201ENSMUST00000134305 661 ntTSL 5 BASIC13.89□□□□□ -0.19
Limch1Q3UH68 Gm1667-201ENSMUST00000151651 558 ntTSL 3 BASIC13.89□□□□□ -0.19
Limch1Q3UH68 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC13.89□□□□□ -0.19
Limch1Q3UH68 Gm7467-201ENSMUST00000185173 652 ntBASIC13.89□□□□□ -0.19
Limch1Q3UH68 Hax1-205ENSMUST00000197767 1092 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Limch1Q3UH68 Gm38804-201ENSMUST00000203998 767 ntTSL 3 BASIC13.89□□□□□ -0.19
Limch1Q3UH68 Gdap2-202ENSMUST00000106997 2014 ntTSL 2 BASIC13.89□□□□□ -0.19
Limch1Q3UH68 F10-201ENSMUST00000033821 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Limch1Q3UH68 Arap1-202ENSMUST00000084896 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Limch1Q3UH68 Ttbk2-203ENSMUST00000085840 11152 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
Limch1Q3UH68 Adamts16-202ENSMUST00000109694 3378 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Limch1Q3UH68 Gpr45-201ENSMUST00000114761 1546 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
Limch1Q3UH68 Zc3hc1-203ENSMUST00000115184 1504 ntTSL 5 BASIC13.89□□□□□ -0.19
Limch1Q3UH68 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC13.89□□□□□ -0.19
Limch1Q3UH68 Eif5-213ENSMUST00000222388 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Limch1Q3UH68 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Limch1Q3UH68 Rnf133-201ENSMUST00000063548 1308 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Limch1Q3UH68 Mob3a-201ENSMUST00000003438 2682 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Limch1Q3UH68 Henmt1-205ENSMUST00000196533 1491 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Limch1Q3UH68 Gm45833-201ENSMUST00000211931 2730 ntTSL 5 BASIC13.88□□□□□ -0.19
Limch1Q3UH68 Cog4-201ENSMUST00000034203 2737 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Limch1Q3UH68 Arhgef2-206ENSMUST00000175779 3065 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
Limch1Q3UH68 Stk10-201ENSMUST00000102821 5026 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Limch1Q3UH68 Sema6d-207ENSMUST00000103240 4372 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Limch1Q3UH68 Fga-201ENSMUST00000029630 2083 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Limch1Q3UH68 Tm2d3-203ENSMUST00000107495 1003 ntAPPRIS P4 TSL 5 BASIC13.88□□□□□ -0.19
Limch1Q3UH68 Gm15711-201ENSMUST00000118889 535 ntBASIC13.88□□□□□ -0.19
Limch1Q3UH68 Nrg4-204ENSMUST00000130158 1000 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 78.4 ms