Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox9Q04887 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox9Q04887 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox9Q04887 Anapc7-202ENSMUST00000119792 3599 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Sox9Q04887 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Sox9Q04887 Il4ra-201ENSMUST00000033004 5256 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox9Q04887 Tmem25-202ENSMUST00000114705 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox9Q04887 Ephx1-201ENSMUST00000036928 1741 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sox9Q04887 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sox9Q04887 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sox9Q04887 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sox9Q04887 Uprt-201ENSMUST00000087867 2304 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sox9Q04887 Ska3-201ENSMUST00000022536 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sox9Q04887 Tkfc-201ENSMUST00000037678 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sox9Q04887 Gm3764-205ENSMUST00000181134 2203 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Sox9Q04887 Gm18227-201ENSMUST00000211082 1468 ntBASIC12.22□□□□□ -0.45
Sox9Q04887 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sox9Q04887 Gm17213-201ENSMUST00000165161 1360 ntBASIC12.22□□□□□ -0.45
Sox9Q04887 4931429L15Rik-201ENSMUST00000159565 2037 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
Sox9Q04887 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sox9Q04887 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sox9Q04887 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sox9Q04887 Sstr5-202ENSMUST00000165183 2581 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sox9Q04887 Tnfrsf9-203ENSMUST00000105671 1278 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sox9Q04887 Rpl35a-204ENSMUST00000115078 500 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sox9Q04887 Gng5-ps-201ENSMUST00000120931 205 ntBASIC12.22□□□□□ -0.45
Sox9Q04887 Gm11244-201ENSMUST00000121243 237 ntBASIC12.22□□□□□ -0.45
Sox9Q04887 Gm11587-201ENSMUST00000128274 1120 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Sox9Q04887 Hmgn2-208ENSMUST00000136327 772 ntTSL 2 BASIC12.22□□□□□ -0.45
Sox9Q04887 Gzmc-201ENSMUST00000015585 894 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sox9Q04887 Acat3-202ENSMUST00000160378 987 ntTSL 5 BASIC12.22□□□□□ -0.45
Sox9Q04887 Gm42430-201ENSMUST00000197209 616 ntBASIC12.22□□□□□ -0.45
Sox9Q04887 2610318N02Rik-202ENSMUST00000207116 1156 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sox9Q04887 Gm45113-201ENSMUST00000207518 165 ntBASIC12.22□□□□□ -0.45
Sox9Q04887 1700026F02Rik-203ENSMUST00000211950 1082 ntTSL 5 BASIC12.22□□□□□ -0.45
Sox9Q04887 BC106175-201ENSMUST00000218578 695 ntTSL 5 BASIC12.22□□□□□ -0.45
Sox9Q04887 CT009546.1-201ENSMUST00000222573 1120 ntBASIC12.22□□□□□ -0.45
Sox9Q04887 Olfr335-ps-201ENSMUST00000223545 939 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Sox9Q04887 Cby1-201ENSMUST00000023064 1119 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sox9Q04887 Tnfrsf9-202ENSMUST00000060901 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sox9Q04887 Fam114a2-202ENSMUST00000108850 1765 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sox9Q04887 Asz1-201ENSMUST00000010940 1736 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sox9Q04887 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Sox9Q04887 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sox9Q04887 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC12.22□□□□□ -0.45
Sox9Q04887 Ddx27-205ENSMUST00000150571 2151 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Sox9Q04887 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Sox9Q04887 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sox9Q04887 Dnm2-206ENSMUST00000172482 2613 ntAPPRIS P4 TSL 5 BASIC12.22□□□□□ -0.45
Sox9Q04887 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Sox9Q04887 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Sox9Q04887 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Sox9Q04887 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Sox9Q04887 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sox9Q04887 Nup62cl-201ENSMUST00000101212 1996 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sox9Q04887 H2-T10-201ENSMUST00000166442 1481 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
Sox9Q04887 Rbms1-201ENSMUST00000028347 4436 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sox9Q04887 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sox9Q04887 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Sox9Q04887 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Sox9Q04887 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sox9Q04887 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Sox9Q04887 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC12.21□□□□□ -0.45
Sox9Q04887 Slc13a5-206ENSMUST00000208912 1751 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Sox9Q04887 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sox9Q04887 Catsper3-201ENSMUST00000021961 1330 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sox9Q04887 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
Sox9Q04887 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Sox9Q04887 Pla2g16-202ENSMUST00000136465 3048 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Sox9Q04887 Slc10a3-204ENSMUST00000114147 1708 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Sox9Q04887 Gm12179-201ENSMUST00000118344 1272 ntBASIC12.21□□□□□ -0.45
Sox9Q04887 Gm9673-201ENSMUST00000119287 781 ntBASIC12.21□□□□□ -0.45
Sox9Q04887 Gm13954-201ENSMUST00000123441 543 ntTSL 3 BASIC12.21□□□□□ -0.45
Sox9Q04887 Gm25226-201ENSMUST00000158198 123 ntBASIC12.21□□□□□ -0.45
Sox9Q04887 Gm3329-201ENSMUST00000159873 556 ntBASIC12.21□□□□□ -0.45
Sox9Q04887 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC12.21□□□□□ -0.45
Sox9Q04887 Gm6644-201ENSMUST00000186507 951 ntBASIC12.21□□□□□ -0.45
Sox9Q04887 Gm17796-201ENSMUST00000189015 1213 ntBASIC12.21□□□□□ -0.45
Sox9Q04887 Gm7271-202ENSMUST00000191515 836 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
Sox9Q04887 Gm37782-201ENSMUST00000194879 678 ntBASIC12.21□□□□□ -0.45
Sox9Q04887 BC049987-201ENSMUST00000213859 918 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Sox9Q04887 Pbld1-204ENSMUST00000219045 602 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Sox9Q04887 CT009527.1-201ENSMUST00000224205 339 ntBASIC12.21□□□□□ -0.45
Sox9Q04887 Ifi27-201ENSMUST00000066701 889 ntAPPRIS P4 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sox9Q04887 Gm10263-201ENSMUST00000085163 300 ntBASIC12.21□□□□□ -0.45
Sox9Q04887 Ibsp-201ENSMUST00000031246 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Sox9Q04887 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Sox9Q04887 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
Sox9Q04887 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Sox9Q04887 Hbs1l-201ENSMUST00000020153 2793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Sox9Q04887 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC12.21□□□□□ -0.46
Sox9Q04887 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.46
Sox9Q04887 Abcd3-201ENSMUST00000029770 3489 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Sox9Q04887 Arvcf-201ENSMUST00000090103 4620 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
Sox9Q04887 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Sox9Q04887 Asphd2-201ENSMUST00000031291 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Sox9Q04887 Tarm1-203ENSMUST00000203821 1535 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Sox9Q04887 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Sox9Q04887 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
Sox9Q04887 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC12.21□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 36 ms