Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 A930005H10Rik-204ENSMUST00000185681 625 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Cdx2P43241 Iqcf3-202ENSMUST00000186668 633 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
Cdx2P43241 A930005H10Rik-206ENSMUST00000188260 739 ntTSL 2 BASIC11.2□□□□□ -0.62
Cdx2P43241 Gm35025-203ENSMUST00000193519 634 ntTSL 3 BASIC11.2□□□□□ -0.62
Cdx2P43241 1700016D08Rik-202ENSMUST00000195807 368 ntBASIC11.2□□□□□ -0.62
Cdx2P43241 Gm43552-201ENSMUST00000196121 365 ntAPPRIS P1 TSL 3 BASIC11.2□□□□□ -0.62
Cdx2P43241 Gm5982-201ENSMUST00000196234 512 ntBASIC11.2□□□□□ -0.62
Cdx2P43241 Gm43634-201ENSMUST00000202671 675 ntTSL 3 BASIC11.2□□□□□ -0.62
Cdx2P43241 Gm18514-201ENSMUST00000218980 436 ntBASIC11.2□□□□□ -0.62
Cdx2P43241 Apoc4-201ENSMUST00000003071 538 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdx2P43241 n-R5s185-201ENSMUST00000083953 119 ntBASIC11.2□□□□□ -0.62
Cdx2P43241 Pisd-203ENSMUST00000120591 2491 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
Cdx2P43241 Zfp125-201ENSMUST00000079237 2488 ntBASIC11.2□□□□□ -0.62
Cdx2P43241 Eif2ak1-201ENSMUST00000100487 4325 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdx2P43241 Gm29724-201ENSMUST00000214688 3062 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Cdx2P43241 Alox12b-201ENSMUST00000036424 2431 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdx2P43241 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdx2P43241 Mog-201ENSMUST00000102665 1704 ntAPPRIS P2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdx2P43241 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdx2P43241 Dram1-201ENSMUST00000020249 2807 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdx2P43241 Fam53c-201ENSMUST00000049281 4475 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdx2P43241 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Cdx2P43241 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC11.2□□□□□ -0.62
Cdx2P43241 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdx2P43241 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdx2P43241 Fyn-207ENSMUST00000146287 2135 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Cdx2P43241 Slc2a7-201ENSMUST00000059893 1578 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
Cdx2P43241 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdx2P43241 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Cdx2P43241 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdx2P43241 Dmbx1-201ENSMUST00000064806 5799 ntAPPRIS P2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdx2P43241 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdx2P43241 Acnat1-202ENSMUST00000107697 1446 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
Cdx2P43241 Ttc29-202ENSMUST00000109902 1416 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
Cdx2P43241 Pitpnm3-201ENSMUST00000075258 6555 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdx2P43241 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdx2P43241 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC11.19□□□□□ -0.62
Cdx2P43241 Catsper3-201ENSMUST00000021961 1330 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdx2P43241 Rprd1b-203ENSMUST00000109518 4399 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Cdx2P43241 Abcg2-202ENSMUST00000114294 2178 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
Cdx2P43241 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdx2P43241 Sgca-202ENSMUST00000103162 1724 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
Cdx2P43241 Itgal-201ENSMUST00000106306 5195 ntAPPRIS P4 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdx2P43241 Gm2000-201ENSMUST00000102782 445 ntAPPRIS P1 BASIC11.19□□□□□ -0.62
Cdx2P43241 Cenpx-203ENSMUST00000106154 873 ntTSL 2 BASIC11.19□□□□□ -0.62
Cdx2P43241 Tomm5-201ENSMUST00000107807 442 ntTSL 2 BASIC11.19□□□□□ -0.62
Cdx2P43241 Rhox3c-202ENSMUST00000115189 648 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
Cdx2P43241 Gm14270-201ENSMUST00000118388 846 ntBASIC11.19□□□□□ -0.62
Cdx2P43241 Gm12783-201ENSMUST00000121425 397 ntBASIC11.19□□□□□ -0.62
Cdx2P43241 Spata3-207ENSMUST00000135440 732 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Cdx2P43241 Ndufc2-202ENSMUST00000149122 470 ntTSL 2 BASIC11.19□□□□□ -0.62
Cdx2P43241 Gm20392-201ENSMUST00000173047 701 ntBASIC11.19□□□□□ -0.62
Cdx2P43241 Rhox3a2-204ENSMUST00000184565 823 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
Cdx2P43241 Gm7271-202ENSMUST00000191515 836 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
Cdx2P43241 Pdcd5-ps-201ENSMUST00000191699 381 ntBASIC11.19□□□□□ -0.62
Cdx2P43241 Gm45641-201ENSMUST00000209775 452 ntTSL 5 BASIC11.19□□□□□ -0.62
Cdx2P43241 AC164437.3-201ENSMUST00000228323 347 ntBASIC11.19□□□□□ -0.62
Cdx2P43241 Atp5h-201ENSMUST00000043931 625 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdx2P43241 Spata3-201ENSMUST00000052854 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdx2P43241 Rps10-ps1-201ENSMUST00000074353 495 ntBASIC11.19□□□□□ -0.62
Cdx2P43241 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdx2P43241 Gm16380-201ENSMUST00000077997 478 ntBASIC11.19□□□□□ -0.62
Cdx2P43241 Rhox3e-201ENSMUST00000081327 648 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
Cdx2P43241 Rhox3a2-201ENSMUST00000096459 828 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdx2P43241 Ube2q2-203ENSMUST00000122441 2081 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdx2P43241 Fcrl1-201ENSMUST00000072480 1980 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdx2P43241 Slc19a1-209ENSMUST00000144234 2309 ntAPPRIS P2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdx2P43241 Olfr322-202ENSMUST00000213232 4632 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
Cdx2P43241 Gm8522-201ENSMUST00000118416 1929 ntBASIC11.19□□□□□ -0.62
Cdx2P43241 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC11.19□□□□□ -0.62
Cdx2P43241 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC11.19□□□□□ -0.62
Cdx2P43241 Dip2a-201ENSMUST00000036033 6322 ntAPPRIS P2 TSL 5 BASIC11.19□□□□□ -0.62
Cdx2P43241 4933406C10Rik-201ENSMUST00000180391 1451 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Cdx2P43241 Gypa-201ENSMUST00000063359 1848 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Cdx2P43241 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC11.19□□□□□ -0.62
Cdx2P43241 Nrxn1-215ENSMUST00000173917 1439 ntTSL 2 BASIC11.18□□□□□ -0.62
Cdx2P43241 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
Cdx2P43241 Lzts3-202ENSMUST00000089561 4169 ntAPPRIS P3 TSL 5 BASIC11.18□□□□□ -0.62
Cdx2P43241 Eif5-202ENSMUST00000166123 4050 ntAPPRIS P2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Cdx2P43241 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Cdx2P43241 Gabre-201ENSMUST00000064780 4306 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Cdx2P43241 Rnf133-202ENSMUST00000115354 1333 ntAPPRIS P1 BASIC11.18□□□□□ -0.62
Cdx2P43241 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC11.18□□□□□ -0.62
Cdx2P43241 Tle6-210ENSMUST00000142948 1961 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Cdx2P43241 Mast1-201ENSMUST00000109741 4872 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Cdx2P43241 Trav13d-1-201ENSMUST00000103588 396 ntAPPRIS P1 BASIC11.18□□□□□ -0.62
Cdx2P43241 Gm12247-201ENSMUST00000117585 670 ntBASIC11.18□□□□□ -0.62
Cdx2P43241 Gm14441-201ENSMUST00000121960 540 ntBASIC11.18□□□□□ -0.62
Cdx2P43241 Gm4862-201ENSMUST00000170405 438 ntBASIC11.18□□□□□ -0.62
Cdx2P43241 Ighv2-1-201ENSMUST00000170946 353 ntBASIC11.18□□□□□ -0.62
Cdx2P43241 Gm6114-201ENSMUST00000182472 968 ntBASIC11.18□□□□□ -0.62
Cdx2P43241 Cd1d2-202ENSMUST00000192481 1131 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Cdx2P43241 Gm8436-201ENSMUST00000210152 1080 ntBASIC11.18□□□□□ -0.62
Cdx2P43241 Gm5749-201ENSMUST00000210673 1090 ntBASIC11.18□□□□□ -0.62
Cdx2P43241 Gm6722-201ENSMUST00000221586 390 ntBASIC11.18□□□□□ -0.62
Cdx2P43241 CT030170.2-201ENSMUST00000223267 126 ntBASIC11.18□□□□□ -0.62
Cdx2P43241 CT573047.1-201ENSMUST00000223652 851 ntBASIC11.18□□□□□ -0.62
Cdx2P43241 Gm4978-201ENSMUST00000071565 801 ntBASIC11.18□□□□□ -0.62
Cdx2P43241 Fam126a-203ENSMUST00000115109 2195 ntTSL 5 BASIC11.18□□□□□ -0.62
Cdx2P43241 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC11.18□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 53.3 ms