Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gga3-201ENSMUST00000019135 3816 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Traf1P39428 Hspa4l-208ENSMUST00000204702 9479 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Traf1P39428 Gm20125-205ENSMUST00000208005 1979 ntTSL 5 BASIC13.69□□□□□ -0.22
Traf1P39428 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Traf1P39428 Six4-202ENSMUST00000175693 6817 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Traf1P39428 Gm43174-201ENSMUST00000195914 2445 ntBASIC13.69□□□□□ -0.22
Traf1P39428 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Traf1P39428 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Traf1P39428 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Traf1P39428 Camta2-204ENSMUST00000108545 4377 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Traf1P39428 Camta2-206ENSMUST00000120261 4398 ntTSL 5 BASIC13.69□□□□□ -0.22
Traf1P39428 Rps6kb1-207ENSMUST00000154617 5531 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Traf1P39428 Ninl-201ENSMUST00000109896 5093 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Traf1P39428 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Traf1P39428 Camkk1-201ENSMUST00000092937 3424 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Traf1P39428 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Traf1P39428 Gm8155-201ENSMUST00000216363 1612 ntBASIC13.68□□□□□ -0.22
Traf1P39428 Tspan14-201ENSMUST00000047652 2475 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Traf1P39428 Gabre-201ENSMUST00000064780 4306 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Traf1P39428 Gm11766-201ENSMUST00000143428 3018 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Traf1P39428 Thy1-201ENSMUST00000114840 1735 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
Traf1P39428 Trappc8-202ENSMUST00000097658 2703 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Traf1P39428 Ebf3-203ENSMUST00000168203 3724 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Traf1P39428 F10-205ENSMUST00000152034 1449 ntTSL 5 BASIC13.68□□□□□ -0.22
Traf1P39428 Gm15566-201ENSMUST00000121130 590 ntBASIC13.68□□□□□ -0.22
Traf1P39428 Rdh9-203ENSMUST00000136223 1276 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Traf1P39428 Gm19459-201ENSMUST00000176240 835 ntBASIC13.68□□□□□ -0.22
Traf1P39428 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Traf1P39428 Creb1-209ENSMUST00000190348 1260 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Traf1P39428 Gm38117-201ENSMUST00000194653 939 ntBASIC13.68□□□□□ -0.22
Traf1P39428 Olfr707-202ENSMUST00000208759 1242 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
Traf1P39428 Lgals4-207ENSMUST00000208971 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Traf1P39428 AC154849.4-201ENSMUST00000224868 365 ntBASIC13.68□□□□□ -0.22
Traf1P39428 Rpl24-201ENSMUST00000023269 677 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Traf1P39428 Gm9785-201ENSMUST00000062642 1006 ntBASIC13.68□□□□□ -0.22
Traf1P39428 Trio-201ENSMUST00000090247 11495 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Traf1P39428 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Traf1P39428 Rapgef2-201ENSMUST00000118100 6573 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Traf1P39428 Axl-202ENSMUST00000085948 3899 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Traf1P39428 Grm5-202ENSMUST00000125009 8047 ntAPPRIS P3 TSL 5 BASIC13.68□□□□□ -0.22
Traf1P39428 Ripk4-202ENSMUST00000113743 3743 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Traf1P39428 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Traf1P39428 Madd-203ENSMUST00000075269 5756 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
Traf1P39428 LMLN2-201ENSMUST00000224691 2342 ntAPPRIS P5 BASIC13.68□□□□□ -0.22
Traf1P39428 Themis3-201ENSMUST00000024914 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Traf1P39428 Slx4ip-206ENSMUST00000180277 2723 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
Traf1P39428 Fancc-217ENSMUST00000163091 2995 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Traf1P39428 Maml3-201ENSMUST00000118075 5450 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Traf1P39428 Sparc-209ENSMUST00000216313 1304 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Traf1P39428 Flywch1-201ENSMUST00000045517 2798 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Traf1P39428 Ppp3cb-202ENSMUST00000159027 3831 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Traf1P39428 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Traf1P39428 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Traf1P39428 Gm26703-201ENSMUST00000181370 2864 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Traf1P39428 Rai1-203ENSMUST00000102688 6921 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Traf1P39428 Myo9b-202ENSMUST00000168839 7102 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Traf1P39428 Epm2aip1-201ENSMUST00000060711 7149 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Traf1P39428 Gpr176-201ENSMUST00000039160 3899 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Traf1P39428 Rin3-201ENSMUST00000056950 3892 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Traf1P39428 Gm36235-201ENSMUST00000223158 1694 ntTSL 5 BASIC13.67□□□□□ -0.22
Traf1P39428 Carmil1-201ENSMUST00000072889 4988 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Traf1P39428 Cstad-201ENSMUST00000102853 819 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Traf1P39428 Gm14193-201ENSMUST00000105067 153 ntBASIC13.67□□□□□ -0.22
Traf1P39428 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
Traf1P39428 Eif5a-205ENSMUST00000108608 775 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Traf1P39428 Fam129a-203ENSMUST00000111875 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Traf1P39428 Mup-ps26-201ENSMUST00000121751 202 ntBASIC13.67□□□□□ -0.22
Traf1P39428 Gm8737-201ENSMUST00000122208 642 ntBASIC13.67□□□□□ -0.22
Traf1P39428 Pcbd2-202ENSMUST00000124968 546 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Traf1P39428 Gm15954-201ENSMUST00000160746 466 ntTSL 5 BASIC13.67□□□□□ -0.22
Traf1P39428 Tspo2-205ENSMUST00000162481 473 ntTSL 5 BASIC13.67□□□□□ -0.22
Traf1P39428 Taf9-201ENSMUST00000167256 1230 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
Traf1P39428 Gm17231-203ENSMUST00000170133 637 ntTSL 3 BASIC13.67□□□□□ -0.22
Traf1P39428 Gnpda2-207ENSMUST00000173927 1011 ntAPPRIS ALT1 TSL 5 BASIC13.67□□□□□ -0.22
Traf1P39428 Gm27530-201ENSMUST00000184096 98 ntBASIC13.67□□□□□ -0.22
Traf1P39428 Nkx2-2os-202ENSMUST00000184407 458 ntBASIC13.67□□□□□ -0.22
Traf1P39428 Stpg4-202ENSMUST00000186211 591 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
Traf1P39428 Ccl4-201ENSMUST00000019074 660 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Traf1P39428 Gm2511-202ENSMUST00000206158 455 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Traf1P39428 Gm6108-201ENSMUST00000208365 367 ntBASIC13.67□□□□□ -0.22
Traf1P39428 Gm45550-201ENSMUST00000209380 946 ntBASIC13.67□□□□□ -0.22
Traf1P39428 Gm45641-201ENSMUST00000209775 452 ntTSL 5 BASIC13.67□□□□□ -0.22
Traf1P39428 AC101677.2-201ENSMUST00000218733 741 ntTSL 3 BASIC13.67□□□□□ -0.22
Traf1P39428 Csrp2-203ENSMUST00000219502 544 ntTSL 3 BASIC13.67□□□□□ -0.22
Traf1P39428 Colec11-203ENSMUST00000220836 887 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Traf1P39428 Try10-201ENSMUST00000072103 860 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Traf1P39428 Steap3-202ENSMUST00000112640 2752 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Traf1P39428 2410002F23Rik-205ENSMUST00000107949 3610 ntAPPRIS P2 TSL 2 BASIC13.67□□□□□ -0.22
Traf1P39428 Sh3pxd2a-202ENSMUST00000111800 10380 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Traf1P39428 Slc6a9-210ENSMUST00000169885 1876 ntTSL 5 BASIC13.67□□□□□ -0.22
Traf1P39428 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC13.67□□□□□ -0.22
Traf1P39428 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Traf1P39428 9530077C05Rik-201ENSMUST00000058868 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Traf1P39428 Ralbp1-202ENSMUST00000166543 4089 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Traf1P39428 Rapgef3-204ENSMUST00000128775 3586 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Traf1P39428 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Traf1P39428 Dcaf1-202ENSMUST00000159645 4945 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Traf1P39428 Tnk2-205ENSMUST00000115124 4424 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Traf1P39428 Dram1-201ENSMUST00000020249 2807 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Traf1P39428 Rps6ka6-203ENSMUST00000096348 4151 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms