Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Cst10-202ENSMUST00000109938 729 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
Col18a1P39061 Gm16227-201ENSMUST00000160088 563 ntTSL 3 BASIC15.26■□□□□ 0.03
Col18a1P39061 Adh6-ps1-202ENSMUST00000196293 754 ntBASIC15.26■□□□□ 0.03
Col18a1P39061 BB187690-201ENSMUST00000198619 1176 ntBASIC15.26■□□□□ 0.03
Col18a1P39061 Gm42375-201ENSMUST00000206226 745 ntTSL 5 BASIC15.26■□□□□ 0.03
Col18a1P39061 Tpd52l1-204ENSMUST00000214644 1103 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col18a1P39061 AC133499.1-201ENSMUST00000227778 1097 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Col18a1P39061 Cst10-201ENSMUST00000047008 804 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col18a1P39061 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col18a1P39061 CT010447.1-201ENSMUST00000225657 1608 ntBASIC15.26■□□□□ 0.03
Col18a1P39061 Mbnl2-208ENSMUST00000227594 2334 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Col18a1P39061 Acsl6-208ENSMUST00000108899 1662 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col18a1P39061 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col18a1P39061 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col18a1P39061 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC15.25■□□□□ 0.03
Col18a1P39061 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col18a1P39061 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col18a1P39061 Pdcl-202ENSMUST00000112940 3056 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col18a1P39061 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col18a1P39061 Awat2-202ENSMUST00000147103 1984 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col18a1P39061 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col18a1P39061 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Col18a1P39061 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col18a1P39061 Tex45-201ENSMUST00000047265 1613 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Col18a1P39061 Lcp2-202ENSMUST00000109329 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col18a1P39061 Mir598-201ENSMUST00000102094 79 ntBASIC15.25■□□□□ 0.03
Col18a1P39061 Capns1-202ENSMUST00000108196 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col18a1P39061 Lime1-202ENSMUST00000108804 960 ntTSL 3 BASIC15.25■□□□□ 0.03
Col18a1P39061 Gm12435-201ENSMUST00000118949 1016 ntBASIC15.25■□□□□ 0.03
Col18a1P39061 Gm14148-201ENSMUST00000122433 1008 ntBASIC15.25■□□□□ 0.03
Col18a1P39061 1700017J07Rik-201ENSMUST00000140241 473 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col18a1P39061 Gm11753-201ENSMUST00000151091 396 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col18a1P39061 Gm36307-201ENSMUST00000195831 953 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col18a1P39061 Sult2b1-207ENSMUST00000210754 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col18a1P39061 Ormdl2-203ENSMUST00000219215 1051 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col18a1P39061 Gm17541-201ENSMUST00000080062 525 ntBASIC15.25■□□□□ 0.03
Col18a1P39061 Gm6157-201ENSMUST00000199935 1897 ntBASIC15.25■□□□□ 0.03
Col18a1P39061 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col18a1P39061 Gm42971-201ENSMUST00000199228 2079 ntBASIC15.25■□□□□ 0.03
Col18a1P39061 Fbxl12os-203ENSMUST00000138471 2127 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col18a1P39061 Cer1-201ENSMUST00000048430 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col18a1P39061 Washc5-201ENSMUST00000022976 4033 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col18a1P39061 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col18a1P39061 Gm13553-201ENSMUST00000133025 1970 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Col18a1P39061 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col18a1P39061 Leprot-201ENSMUST00000030254 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col18a1P39061 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col18a1P39061 Gm13505-201ENSMUST00000121666 817 ntBASIC15.24■□□□□ 0.03
Col18a1P39061 Gm12668-201ENSMUST00000134966 575 ntTSL 3 BASIC15.24■□□□□ 0.03
Col18a1P39061 Gm15258-201ENSMUST00000153801 741 ntBASIC15.24■□□□□ 0.03
Col18a1P39061 Stard6-206ENSMUST00000174118 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col18a1P39061 1700019D03Rik-207ENSMUST00000191441 638 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
Col18a1P39061 Gm38349-201ENSMUST00000195732 462 ntBASIC15.24■□□□□ 0.03
Col18a1P39061 Gm3527-201ENSMUST00000198905 460 ntBASIC15.24■□□□□ 0.03
Col18a1P39061 Gm5291-201ENSMUST00000201965 899 ntBASIC15.24■□□□□ 0.03
Col18a1P39061 Gm9619-201ENSMUST00000211587 762 ntBASIC15.24■□□□□ 0.03
Col18a1P39061 AC124503.1-201ENSMUST00000218524 526 ntTSL 3 BASIC15.24■□□□□ 0.03
Col18a1P39061 Gm12248-203ENSMUST00000219877 1160 ntAPPRIS P5 TSL 5 BASIC15.24■□□□□ 0.03
Col18a1P39061 Slc35f6-205ENSMUST00000196740 1972 ntTSL 5 BASIC15.24■□□□□ 0.03
Col18a1P39061 Gm33831-201ENSMUST00000211696 1542 ntTSL 5 BASIC15.24■□□□□ 0.03
Col18a1P39061 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col18a1P39061 Rps9-202ENSMUST00000108623 1347 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col18a1P39061 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col18a1P39061 Cwc25-202ENSMUST00000107579 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col18a1P39061 Hyal3-201ENSMUST00000040059 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col18a1P39061 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col18a1P39061 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col18a1P39061 Gm45416-201ENSMUST00000209713 2201 ntBASIC15.24■□□□□ 0.03
Col18a1P39061 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC15.24■□□□□ 0.03
Col18a1P39061 Fgf12-201ENSMUST00000100024 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col18a1P39061 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Col18a1P39061 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col18a1P39061 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC15.24■□□□□ 0.03
Col18a1P39061 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col18a1P39061 Camk2a-204ENSMUST00000115295 979 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col18a1P39061 Ywhaq-ps3-201ENSMUST00000120944 738 ntBASIC15.24■□□□□ 0.03
Col18a1P39061 7330404K18Rik-201ENSMUST00000125558 487 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Col18a1P39061 Gm9639-201ENSMUST00000172205 678 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Col18a1P39061 1700084F23Rik-202ENSMUST00000188461 747 ntTSL 3 BASIC15.24■□□□□ 0.03
Col18a1P39061 Pebp1-201ENSMUST00000036951 1240 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Col18a1P39061 Olfr1394-201ENSMUST00000052668 939 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Col18a1P39061 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col18a1P39061 Gm35363-201ENSMUST00000209330 1317 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col18a1P39061 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col18a1P39061 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col18a1P39061 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Col18a1P39061 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC15.23■□□□□ 0.03
Col18a1P39061 Pole-202ENSMUST00000112481 1523 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col18a1P39061 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Col18a1P39061 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col18a1P39061 Bpi-201ENSMUST00000065039 1926 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col18a1P39061 Prkag3-201ENSMUST00000081636 2341 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col18a1P39061 Gm26908-201ENSMUST00000181856 1637 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Col18a1P39061 AC151836.1-201ENSMUST00000228730 1637 ntBASIC15.23■□□□□ 0.03
Col18a1P39061 Wfdc2-203ENSMUST00000109345 558 ntAPPRIS ALT2 TSL 3 BASIC15.23■□□□□ 0.03
Col18a1P39061 0610037L13Rik-206ENSMUST00000120473 835 ntTSL 2 BASIC15.23■□□□□ 0.03
Col18a1P39061 Gm23432-201ENSMUST00000157181 131 ntBASIC15.23■□□□□ 0.03
Col18a1P39061 Gm22763-201ENSMUST00000158374 107 ntBASIC15.23■□□□□ 0.03
Col18a1P39061 Gm25591-201ENSMUST00000177317 94 ntBASIC15.23■□□□□ 0.03
Col18a1P39061 Dnajc4-202ENSMUST00000179118 840 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 61.5 ms