Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 1500004A13Rik-209ENSMUST00000185189 1659 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Col1a1P11087 Gm9369-201ENSMUST00000196009 733 ntBASIC13.67□□□□□ -0.22
Col1a1P11087 4930477O15Rik-201ENSMUST00000196484 1089 ntBASIC13.67□□□□□ -0.22
Col1a1P11087 5830437K03Rik-201ENSMUST00000199219 1379 ntBASIC13.67□□□□□ -0.22
Col1a1P11087 Gm5053-201ENSMUST00000208361 1678 ntBASIC13.67□□□□□ -0.22
Col1a1P11087 Olfr692-202ENSMUST00000217827 1126 ntBASIC13.67□□□□□ -0.22
Col1a1P11087 BC106175-201ENSMUST00000218578 695 ntTSL 5 BASIC13.67□□□□□ -0.22
Col1a1P11087 AC155298.2-201ENSMUST00000225485 6226 ntBASIC13.67□□□□□ -0.22
Col1a1P11087 Triap1-201ENSMUST00000031508 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col1a1P11087 Grm6-201ENSMUST00000000631 4291 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Col1a1P11087 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col1a1P11087 Krtap4-1-201ENSMUST00000081007 1015 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Col1a1P11087 Olfr692-201ENSMUST00000098152 1126 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Col1a1P11087 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Col1a1P11087 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col1a1P11087 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Col1a1P11087 Txndc5-203ENSMUST00000160653 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col1a1P11087 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col1a1P11087 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Col1a1P11087 Fndc8-201ENSMUST00000018988 2166 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col1a1P11087 Osgin1-206ENSMUST00000152420 2005 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col1a1P11087 C130026I21Rik-202ENSMUST00000093506 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col1a1P11087 Ifi47-202ENSMUST00000109202 1773 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
Col1a1P11087 Tpra1-218ENSMUST00000203185 1718 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Col1a1P11087 Gm11190-201ENSMUST00000132487 3414 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Col1a1P11087 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col1a1P11087 Zfp810-201ENSMUST00000086278 3238 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col1a1P11087 Cfap61-201ENSMUST00000116398 1561 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Col1a1P11087 Creb3l4-201ENSMUST00000029547 1553 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col1a1P11087 Hsd17b6-203ENSMUST00000219447 1459 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col1a1P11087 Gm44190-201ENSMUST00000205083 1401 ntBASIC13.66□□□□□ -0.22
Col1a1P11087 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col1a1P11087 Akr1b8-201ENSMUST00000038406 1358 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col1a1P11087 9430015G10Rik-202ENSMUST00000105576 1329 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Col1a1P11087 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col1a1P11087 Gm3415-201ENSMUST00000110595 924 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Col1a1P11087 Gm3409-201ENSMUST00000110597 952 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Col1a1P11087 Cat-202ENSMUST00000111168 779 ntTSL 3 BASIC13.66□□□□□ -0.22
Col1a1P11087 Clps-202ENSMUST00000114785 369 ntTSL 2 BASIC13.66□□□□□ -0.22
Col1a1P11087 Gm13284-201ENSMUST00000121020 547 ntBASIC13.66□□□□□ -0.22
Col1a1P11087 Aamdc-207ENSMUST00000138060 467 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Col1a1P11087 Gm24992-201ENSMUST00000157412 130 ntBASIC13.66□□□□□ -0.22
Col1a1P11087 Gm23400-201ENSMUST00000174994 102 ntBASIC13.66□□□□□ -0.22
Col1a1P11087 Gm26463-201ENSMUST00000175065 101 ntBASIC13.66□□□□□ -0.22
Col1a1P11087 Gm24332-201ENSMUST00000175102 102 ntBASIC13.66□□□□□ -0.22
Col1a1P11087 Gm25959-201ENSMUST00000175112 102 ntBASIC13.66□□□□□ -0.22
Col1a1P11087 Gm22475-201ENSMUST00000175169 102 ntBASIC13.66□□□□□ -0.22
Col1a1P11087 Gm22903-201ENSMUST00000175193 102 ntBASIC13.66□□□□□ -0.22
Col1a1P11087 Gm25070-201ENSMUST00000175237 102 ntBASIC13.66□□□□□ -0.22
Col1a1P11087 Gm24159-201ENSMUST00000175264 102 ntBASIC13.66□□□□□ -0.22
Col1a1P11087 Gm25299-201ENSMUST00000175283 102 ntBASIC13.66□□□□□ -0.22
Col1a1P11087 Gm23798-201ENSMUST00000175560 102 ntBASIC13.66□□□□□ -0.22
Col1a1P11087 Gm23802-201ENSMUST00000175565 102 ntBASIC13.66□□□□□ -0.22
Col1a1P11087 Gm25708-201ENSMUST00000177687 102 ntBASIC13.66□□□□□ -0.22
Col1a1P11087 Gm24370-201ENSMUST00000178007 102 ntBASIC13.66□□□□□ -0.22
Col1a1P11087 Gm23049-201ENSMUST00000178068 102 ntBASIC13.66□□□□□ -0.22
Col1a1P11087 Gm28019-201ENSMUST00000178138 101 ntBASIC13.66□□□□□ -0.22
Col1a1P11087 Gm25571-201ENSMUST00000178322 102 ntBASIC13.66□□□□□ -0.22
Col1a1P11087 Gm25355-201ENSMUST00000178456 101 ntBASIC13.66□□□□□ -0.22
Col1a1P11087 Gm24975-201ENSMUST00000178492 101 ntBASIC13.66□□□□□ -0.22
Col1a1P11087 Gm23189-201ENSMUST00000178954 102 ntBASIC13.66□□□□□ -0.22
Col1a1P11087 Gm26272-201ENSMUST00000179241 132 ntBASIC13.66□□□□□ -0.22
Col1a1P11087 Gm25100-201ENSMUST00000179750 101 ntBASIC13.66□□□□□ -0.22
Col1a1P11087 Gm23064-201ENSMUST00000179866 101 ntBASIC13.66□□□□□ -0.22
Col1a1P11087 Gm29233-201ENSMUST00000190311 281 ntTSL 5 BASIC13.66□□□□□ -0.22
Col1a1P11087 Mllt11-204ENSMUST00000198948 793 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
Col1a1P11087 E230014E18Rik-201ENSMUST00000215920 859 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Col1a1P11087 Gm3402-202ENSMUST00000077133 924 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Col1a1P11087 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
Col1a1P11087 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col1a1P11087 Rusc1-201ENSMUST00000052539 3316 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col1a1P11087 1500002C15Rik-201ENSMUST00000178987 2183 ntBASIC13.66□□□□□ -0.22
Col1a1P11087 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col1a1P11087 Rxrg-201ENSMUST00000015987 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col1a1P11087 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col1a1P11087 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Col1a1P11087 Ung-203ENSMUST00000112275 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col1a1P11087 Npy5r-202ENSMUST00000211920 1715 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Col1a1P11087 Ablim1-211ENSMUST00000111555 2562 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Col1a1P11087 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col1a1P11087 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col1a1P11087 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.22
Col1a1P11087 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC13.65□□□□□ -0.22
Col1a1P11087 Pla2g6-206ENSMUST00000173163 3018 ntTSL 5 BASIC13.65□□□□□ -0.22
Col1a1P11087 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC13.65□□□□□ -0.22
Col1a1P11087 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Col1a1P11087 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col1a1P11087 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col1a1P11087 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col1a1P11087 Fig4-201ENSMUST00000043814 3282 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col1a1P11087 Gm11554-201ENSMUST00000105056 890 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Col1a1P11087 Smim8-204ENSMUST00000108133 935 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col1a1P11087 Fas-202ENSMUST00000112472 555 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Col1a1P11087 Gm14497-201ENSMUST00000119537 580 ntBASIC13.65□□□□□ -0.22
Col1a1P11087 Snrnp25-202ENSMUST00000121182 659 ntAPPRIS ALT2 TSL 3 BASIC13.65□□□□□ -0.22
Col1a1P11087 Bloc1s1-205ENSMUST00000153731 613 ntTSL 5 BASIC13.65□□□□□ -0.22
Col1a1P11087 Fxyd5-203ENSMUST00000159924 805 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.22
Col1a1P11087 Fxyd5-210ENSMUST00000162116 817 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.22
Col1a1P11087 Gm37365-201ENSMUST00000193109 409 ntBASIC13.65□□□□□ -0.22
Col1a1P11087 Gm44323-201ENSMUST00000198689 129 ntBASIC13.65□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms